Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18420 134 / 4e-39 Protein prenylyltransferase superfamily protein (.1) AT2G37400 83 / 1e-19 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53560 81 / 6e-19 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02590 81 / 1e-18 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39470 75 / 1e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09490 58 / 2e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G78915 40 / 0.0002 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031923 [exp] 212 / 2e-69 AT3G18420 270 / 2e-89 Protein prenylyltransferase superfamily protein (.1) Lus10024433 [exp] 68 / 5e-14 AT2G37400 271 / 1e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025299 [exp] 67 / 1e-13 AT2G37400 272 / 3e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035707 [exp] 58 / 2e-10 AT4G39470 257 / 3e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G143600 [exp] 149 / 1e-44 AT3G18420 356 / 4e-123 Protein prenylyltransferase superfamily protein (.1) Potri.010G098500 [exp] 142 / 5e-42 AT3G18420 328 / 5e-112 Protein prenylyltransferase superfamily protein (.1) Potri.008G142980 [exp] 135 / 2e-41 AT3G18420 244 / 5e-82 Protein prenylyltransferase superfamily protein (.1) Potri.007G079200 [exp] 83 / 1e-19 AT4G39470 314 / 5e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G080000 [exp] 82 / 3e-19 AT2G37400 342 / 4e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G213600 [exp] 79 / 3e-18 AT3G53560 327 / 1e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G085700 [exp] 77 / 2e-17 AT4G39470 296 / 7e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G081200 [exp] 61 / 6e-13 AT3G53560 127 / 2e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G003800 [exp] 40 / 0.0003 AT1G78915 448 / 3e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035087 pacid=23162525 polypeptide=Lus10035087 locus=Lus10035087.g ID=Lus10035087.BGIv1.0 annot-version=v1.0 ATGTGGAGAAGAAATGGTGGTGGGGGCCTTGGCTGCAGTCTGCTGTGTGCGCGACTAAGCCAGCCGCAGGAAGGGGAAGGTGCGGTTTCGAGACTGGAGA GCGCGTTGCAGATTGCAGAAGAAGAGGAAAATGTGAAGGAAGGTCGTGCGGTGAGGATGATAATGGCGCAGGTGTATTTCTTGCTGAAGAATATGGAGGA GGCGTTGAAGATATACCATGAGCTGTCTAAGGAGGATCCTCGGGATGTTAGGCCTTATTACTGCAATGGGATCATATACCGTATGCTTAAGAAGAATGAG GAAGCGAAACGGGAGTTTGCTAAGTATCGAGAGCTGTCGCCTAAGAAAGGTGAGGTTGATGATGCTTACTTGAGGACTGCATTGTCCGGAACGACTACAG GGTTCGAATCGAATGACAACAACTAA
AA sequence Show only first row Show all	>Lus10035087 pacid=23162525 polypeptide=Lus10035087 locus=Lus10035087.g ID=Lus10035087.BGIv1.0 annot-version=v1.0 MWRRNGGGGLGCSLLCARLSQPQEGEGAVSRLESALQIAEEEENVKEGRAVRMIMAQVYFLLKNMEEALKIYHELSKEDPRDVRPYYCNGIIYRMLKKNE EAKREFAKYRELSPKKGEVDDAYLRTALSGTTTGFESNDNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18420			Protein prenylyltransferase su...		Lus10035087 [exp]	0	1
AT2G01520		ZCE1, MLP328	\(Zusammen-CA\)-enhanced 1, ML...		Lus10028887 [exp]	2.4	0.8821
AT5G12300			Calcium-dependent lipid-bindin...		Lus10001346 [exp]	2.6	0.8863
AT5G22580			Stress responsive A/B Barrel D...		Lus10009407 [exp]	11.9	0.8597
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10002305 [exp]	13.6	0.8471
AT1G61700			RNA polymerases N / 8 kDa subu...		Lus10013128 [exp]	13.8	0.7586
AT2G34200			RING/FYVE/PHD zinc finger supe...		Lus10007293 [exp]	15.5	0.8224
					Lus10040164 [exp]	15.5	0.7438
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Lus10024884 [exp]	15.7	0.6927
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10005447 [exp]	17.0	0.8159
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10026198 [exp]	17.7	0.8384

Compare expression of checked genes

Lus10035087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.