Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13770 524 / 2e-180 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G02860 129 / 4e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G16010 128 / 5e-31 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G42310 127 / 1e-30 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G06920 119 / 6e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 114 / 1e-26 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G41170 112 / 4e-26 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G22470 112 / 8e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 112 / 9e-26 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G63080 110 / 4e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000268 [exp] 1204 / 0 AT5G13770 528 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10017684 [exp] 129 / 4e-31 AT4G28010 596 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001284 [exp] 122 / 1e-28 AT1G31840 645 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10016009 [exp] 120 / 4e-28 AT5G42310 921 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10013283 [exp] 116 / 5e-27 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10012268 [exp] 116 / 6e-27 AT5G42310 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10011464 [exp] 115 / 1e-26 AT3G16010 888 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10009465 [exp] 115 / 2e-26 AT1G31840 640 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10042768 [exp] 112 / 9e-26 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G098700 [exp] 636 / 0 AT5G13770 584 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.008G142900 [exp] 603 / 0 AT5G13770 544 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G271200 [exp] 128 / 4e-31 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050500 [exp] 127 / 7e-31 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G257300 [exp] 127 / 1e-30 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G010900 [exp] 126 / 3e-30 AT5G42310 939 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G105700 [exp] 125 / 1e-29 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G038400 [exp] 123 / 2e-29 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 123 / 3e-29 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 122 / 3e-29 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10035089 pacid=23162509 polypeptide=Lus10035089 locus=Lus10035089.g ID=Lus10035089.BGIv1.0 annot-version=v1.0 ATGGCAACAATTCCTTCATCTCCTGAATGGTCTCTGGTACCTTCTTCTTCTTACTCAACCACTTGCTTCGCCAAACCAAACAAGTTCCCTACTTCCTTCA CCCATCTCCCTTCCTATCGCCCCAACTCCAATCACCACATCAAGGCTTATAACATCTTCCCATCCGCTGCATTAGTCGAAGAAGACAACAAGAAAGAAGA AACCCCTCAGAAATTTCGCTTCAGATTTCAACGAGACAACTCACAGCCTTATCCTGCTTCCGATGCGGAGAATCTCAACGCTTTCCTTTCTGGGTTGCTT CAGGATCCGAGAACCGAACCTTTAGCTTACGAGCATTACCAGAAAGCCAAGGAAGGAAAGCCCGGGTTCAAACCGGCGAAGTCGGTCGTCAAGCTTCTTC TCAGGTACTTGGCTCGTTCCAAGAACTGGGATGGTTTGATTCTGCTGCTTTCCGATGATCTTAGAAGGTATGGAAATGGTAGTTTGCCTGATGCTTATAC TTGTTCAAAACTTGTAGAGAGTTGCGTCCAAGCTAGGAAGTTCAAAGCTGCGGAACGCCTTTTGGTGATTTTTGTCCAATCTGAAAACCCTAAAATCTCC GTGCTGTCTTTTAACGCTGCGATGAAGGGTTATAACAAGTTACATATGTATAGTAGTACAATTCGAATGTACAACAAGATAAAATCGTTAGGGATCGGTT TGAATTCTGGTTGCTATTATCAGACAATGAAGGCATACCAGAAACTTGGTAAAGTGGAGAAAGTTATGGCATTGTTTCATGAATGTCAAGGTGGAGATTT AGACACAAAGGAGGAAGTGTTGAGCAAAATGTACAGGGTATTGTGCGAATCTCTGGCGAAAACCTGGCGAGCTTCTGATGCAATTGGTTACTTAAGAGAC ATGGTGAGTAAAGGTGGAAAGGTTGTGGATCATTCAGTGGTTTACTCTTCCTTGATATGCTCACTTGCCAACTCCGGCCAAGTGGCGGAATCCGAAATGT TGTTTGAGGAAGCAATCCGGAAGAATGTGTTGAGAGATCCGGAAGTGTTCTCCAAGCTAGTTTCGATGTATGTATCGAAAGGCCAAGTGGAGAAGACTTT GGATGTTGTCAAGGCAATGAGCGTGGATGCTAAGATGAAAGTGTCGGATTGCATACTCTGCACGGTAGTGAGTGGTTTCGCGAAACGAAGAGGGTTTGGT TCCGCGGTGAAAGTCTACGAGGAGTTGATAAGCGAAGGATACGAGCCGGGGCAAGTGACTTATGCATCGGCTGTGAATGCATACTATCGGATCGATGAGT ATCCCAAAGCGGAGAAGGTGTTCCTCGAGATGCAAGAAAAAGGGTTCGACAAATGTGTGGTGGCATACTCGACAATGATCACAATGTACGGTAAGCTAGG GAGGGTGAGGGATGCAATGCGGATGTTAGGGGAGATGAAGCAGAGGAAGTGTGACCCAAACATTTGGGTGTACAATGCTTTAATGGATATGCACGGAAAG GCGATGAATCTGAGGCAGGTGGAGAAGTTATGGAAGGAGGTGGAGAGGAGGAGGCTGGCTCCTGATAAGGTGAGTTACACGAGCATTATAAGCGCGTACA GCAAGGCGCAGAAGTTCGATGAGTGTGTGAAGTATTTTGAGGAGTATAGGATGAGGGCGGATGGTGGAAGAGGTGGGGTGGATATGAAGATGGCGGGGAT TATGGTGGGGGTGTTTTCGAATATGAGCTTGATAGATGAGTTGGTGAAGCTGCTGAGGGATATGAAATCAGTAGGGACAGTGTTAGATGGGAGGCTGTAT AGGACTGCTTTGAATGCACTGAGAGATGCTGGTATGGAATCTCAATCCAGATGGTTAATGGATAGTTTTCAAGCTAATTGA
AA sequence Show only first row Show all	>Lus10035089 pacid=23162509 polypeptide=Lus10035089 locus=Lus10035089.g ID=Lus10035089.BGIv1.0 annot-version=v1.0 MATIPSSPEWSLVPSSSYSTTCFAKPNKFPTSFTHLPSYRPNSNHHIKAYNIFPSAALVEEDNKKEETPQKFRFRFQRDNSQPYPASDAENLNAFLSGLL QDPRTEPLAYEHYQKAKEGKPGFKPAKSVVKLLLRYLARSKNWDGLILLLSDDLRRYGNGSLPDAYTCSKLVESCVQARKFKAAERLLVIFVQSENPKIS VLSFNAAMKGYNKLHMYSSTIRMYNKIKSLGIGLNSGCYYQTMKAYQKLGKVEKVMALFHECQGGDLDTKEEVLSKMYRVLCESLAKTWRASDAIGYLRD MVSKGGKVVDHSVVYSSLICSLANSGQVAESEMLFEEAIRKNVLRDPEVFSKLVSMYVSKGQVEKTLDVVKAMSVDAKMKVSDCILCTVVSGFAKRRGFG SAVKVYEELISEGYEPGQVTYASAVNAYYRIDEYPKAEKVFLEMQEKGFDKCVVAYSTMITMYGKLGRVRDAMRMLGEMKQRKCDPNIWVYNALMDMHGK AMNLRQVEKLWKEVERRRLAPDKVSYTSIISAYSKAQKFDECVKYFEEYRMRADGGRGGVDMKMAGIMVGVFSNMSLIDELVKLLRDMKSVGTVLDGRLY RTALNALRDAGMESQSRWLMDSFQAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13770			Pentatricopeptide repeat (PPR-...		Lus10035089 [exp]	0	1
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10042431 [exp]	1.0	0.9722
AT5G13770			Pentatricopeptide repeat (PPR-...		Lus10000268 [exp]	1.4	0.9527
AT2G05620		PGR5	proton gradient regulation 5 (...		Lus10011777 [exp]	2.4	0.9503
AT3G01060			unknown protein		Lus10005219 [exp]	4.5	0.9288
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10026238 [exp]	4.9	0.9422
AT2G34430		LHCB1.4, LHB1B1	light-harvesting chlorophyll-p...		Lus10038489 [exp]	6.9	0.9139
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10022903 [exp]	7.5	0.8893
AT3G10940		LSF2	LIKE SEX4 2, dual specificity ...		Lus10034214 [exp]	8.7	0.8830
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10023322 [exp]	8.8	0.9036
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Lus10008951 [exp]	9.2	0.9161

Compare expression of checked genes

Lus10035089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.