Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75010 558 / 0 ARC3 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1) AT1G60890 81 / 3e-15 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G10900 67 / 3e-11 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT2G35170 67 / 4e-11 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G77660 66 / 4e-11 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G21980 66 / 8e-11 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT1G77740 66 / 9e-11 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT1G21920 64 / 3e-10 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT2G26420 63 / 6e-10 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT4G17080 61 / 2e-09 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031930 [exp] 1411 / 0 AT1G75010 549 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1) Lus10000187 [exp] 610 / 0 AT1G75010 185 / 5e-53 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1) Lus10020821 [exp] 74 / 3e-13 AT1G60890 935 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10012689 [exp] 72 / 1e-12 AT1G60890 932 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10017047 [exp] 69 / 5e-12 AT2G36250 597 / 0.0 Tubulin/FtsZ family protein (.1.2) Lus10021367 [exp] 68 / 1e-11 AT3G52750 607 / 0.0 Tubulin/FtsZ family protein (.1) Lus10008325 [exp] 64 / 2e-10 AT1G77660 438 / 8e-152 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10029661 [exp] 64 / 3e-10 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10015456 [exp] 64 / 3e-10 AT1G60890 1036 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G099300 [exp] 777 / 0 AT1G75010 657 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1) Potri.008G142301 [exp] 70 / 4e-15 AT1G75010 71 / 1e-16 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1) Potri.003G019100 [exp] 72 / 1e-12 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.005G175800 [exp] 69 / 4e-12 AT1G21920 372 / 3e-126 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.001G211200 [exp] 68 / 2e-11 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.002G088100 [exp] 67 / 3e-11 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.005G172800 [exp] 66 / 1e-10 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.006G083100 [exp] 65 / 1e-10 AT3G52750 647 / 0.0 Tubulin/FtsZ family protein (.1) Potri.002G085900 [exp] 63 / 3e-10 AT1G21920 396 / 7e-136 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.003G196000 [exp] 62 / 2e-09 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0251 [flax] [poplar] MORN PF02493 [flax] [poplar] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Lus10035091 pacid=23162401 polypeptide=Lus10035091 locus=Lus10035091.g ID=Lus10035091.BGIv1.0 annot-version=v1.0 ATGCAATTCTCCATCATAAGCCCTCTGAAATGGAGCTCTGTCTGTTCCAAAGAATGGTTCCCTCCTCAATCTACTTTCACCGTCCCCGTCATCTCTTTGC AATCCGTCTCCTCCCATGGCGAATGCCGTGGTTGCCTGAGGTGGCGTCTCGGTAGCTACCCTAGGAGGTCTCGTAGGTTGACCGTGGCATCGTCGAACAA AGCTAGGGAAACGAATTGCAGAGAGCGCGCCGCTACTGCTTACCACGACACCGTTAGCCCTCCATTGGTGGAGGTCATTGGCATTGGAAGTAGGAAGGAT GCCGTTCTCCGCTTCTGCTTGGAATCTCCTTTCCAGCTCTCGCAGTCCGTCCGCTACTGGAACATTCGTGCAAAAGATCCCTTAAATGTTCAATTAGAAG AAAGGCTTATTGAGACAGGTCATCCGAAGCCAAGGTGTCTGGGAGCTTCTCAGTTTCTGGAAACATGTTCGCAGACTTTAATCCTTGTGGCAAGTGGAGG ATATGGCTTGGATCACGATGCGGCTGTGGACATTCTTAAAACGGTCAGATCAAGAAATGGATTAGCCATTGCTATTGTTCTAAACCCTTTCAGCTTTGAA GGAAAAAGGCGCCAAGTTGAGGTGAACACTTTGACTCAAAAGCTTCAAGAGCATACAGACTTTTATATTGATATGGCTACAGATTCGCTGCTTAAAAATG ATTTGGTGACTCTCGATGATGCTCTGAGGACTGCAGATACTGCTGTTTCATTGGCCATAAAGGCAATCTCTTTGTTTGTCTCTCCTCAGGAGACGCATAA AAAACTAATTGATGGACCACAGGATAATGTGAAAGGGCTCGAAGTTTCCAGCATTTTAAAAAATCTGGACAGCCAGAAAGAAGCGAAAATCGGATTTGGA GTGGCTAACAGCATTAGAGATTCAGTTATGCAGGCTCTTTATGAATGCCCTTTCATTGGCACTGGTATAGAGGATTCAAATGGGATAGTATTCTGCATCA TTACTAGCTCAGATATTATCAAAGATGAAGATGTGCATGCCACTTTAGACATTTTCCGTCAGGCAGTGAAGTTCACTGGGAAAGTTGTTATAGCTTCTTC TCATGAACCCAATCTGGAGCCAAACATGCTAGTGACAGCAATTATTGTGATGGGTAGTAGACCTCAAACACAGGCTCTTCCAAAGAAAACCATCTTTTCC ACACTCGCGGAGCATTTCCCTTCCATTTTAAAATTCTTTATGGGAAACCAGCAATTGAAGGAAAAGGCAGAAATGAACACCGGCAATCTCGCTGAAACAA TATATTCGCCAGATGCTACTGCAGAGGGAGATGTGATTCCCCTGAATGGTATGGCTGATGGAGCTGACACGTGGCATGAGGATGACAATAACACAGTATT TAGTGGACTCGATGAAGATTCTGATTTCAGAGATGGAGGTGGAAATGAAGATCTGTTAGAAGACTCTTCTGACTTCAATGAACAAATTACTGAAGGCAAT ATTGCGTTCCAAAGGGAATTGCAACGAAATGGGAACTTGGGTCTTGGGCATCAGATAGCAGAGAAGTGGGCTAAACAAAGGGCTAGAACTCCGGTTCTTG ATAATTTGAGTATCTTTCCCCTTCCAGTTGGCGTGAGGCGTCCAGAAGAGTTAGGGGACATTCAGGATATCTCATACTTTGAAGAATGGAAAGAGGAGAA TGCTCTCCCAGAACAACTTGGTGAGGACCCAAGTGGTTCTTCATTGGGTGCTTTGACTGATGCTGGTTTTCTAGCTGTGAAGGACTTCTACAGCTATGCT TCTGCCTTGTTGAAGTCCAGAAATGATGAAGCAGCCAGAAAGCAAGGAGTTCTTTCCGTTCGTGCTGCTTCTGTGCTGGAGTCTGAGCGTGGTTCACCGA GAAAGTGGAGTCCGACAACAGAAATGCACTACAGAGGTGGACTTTACAAGGGACGATGCCAAGGGGGACTTCCTGAAGGAAAGGGCCGTCTTGTCCTTCA TGATGGGAGCATATATGATGGCATGTGGCATTATGGGAAAAGATCAGGACTTGGGGCTTGTTACTTCAGCAATGGTGATGTCTTCCAGGGTTCATGGAGG GACGATCTTATGCATGGCAAGGGTTGGTTTTATTTCCACACTGGGGATCGTTGGTTTGCAAACTTCTGGAAGGGAAAGGCGAATGGTGAAAGCCGATTCT ATTCAAAACAAGGCGATGTCTTTTTTGGCCAGTTTCAAGACGGTTGGCGCCAGGGGGATTTTCTGTGTGTAGATGTTGAAGGAACAAGGTGCATTGAAGT CTGGAACAAGGGACTGCTTGTAAGCCGTAAGCCCTTGGATTCTGATAATGTCGGTGAATAG
AA sequence Show only first row Show all	>Lus10035091 pacid=23162401 polypeptide=Lus10035091 locus=Lus10035091.g ID=Lus10035091.BGIv1.0 annot-version=v1.0 MQFSIISPLKWSSVCSKEWFPPQSTFTVPVISLQSVSSHGECRGCLRWRLGSYPRRSRRLTVASSNKARETNCRERAATAYHDTVSPPLVEVIGIGSRKD AVLRFCLESPFQLSQSVRYWNIRAKDPLNVQLEERLIETGHPKPRCLGASQFLETCSQTLILVASGGYGLDHDAAVDILKTVRSRNGLAIAIVLNPFSFE GKRRQVEVNTLTQKLQEHTDFYIDMATDSLLKNDLVTLDDALRTADTAVSLAIKAISLFVSPQETHKKLIDGPQDNVKGLEVSSILKNLDSQKEAKIGFG VANSIRDSVMQALYECPFIGTGIEDSNGIVFCIITSSDIIKDEDVHATLDIFRQAVKFTGKVVIASSHEPNLEPNMLVTAIIVMGSRPQTQALPKKTIFS TLAEHFPSILKFFMGNQQLKEKAEMNTGNLAETIYSPDATAEGDVIPLNGMADGADTWHEDDNNTVFSGLDEDSDFRDGGGNEDLLEDSSDFNEQITEGN IAFQRELQRNGNLGLGHQIAEKWAKQRARTPVLDNLSIFPLPVGVRRPEELGDIQDISYFEEWKEENALPEQLGEDPSGSSLGALTDAGFLAVKDFYSYA SALLKSRNDEAARKQGVLSVRAASVLESERGSPRKWSPTTEMHYRGGLYKGRCQGGLPEGKGRLVLHDGSIYDGMWHYGKRSGLGACYFSNGDVFQGSWR DDLMHGKGWFYFHTGDRWFANFWKGKANGESRFYSKQGDVFFGQFQDGWRQGDFLCVDVEGTRCIEVWNKGLLVSRKPLDSDNVGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Lus10035091 [exp]	0	1
AT1G76050			Pseudouridine synthase family ...		Lus10017250 [exp]	2.8	0.9059
AT3G16000		MFP1	MAR binding filament-like prot...		Lus10025769 [exp]	2.8	0.9009
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Lus10000187 [exp]	3.0	0.8812
AT1G73970			unknown protein		Lus10000648 [exp]	5.7	0.8956
AT3G54190			Transducin/WD40 repeat-like su...		Lus10003237 [exp]	9.8	0.8647
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10001060 [exp]	11.9	0.8963
AT1G70070		ISE2, EMB25, PD...	PIGMENT DEFECTIVE 317, INCREAS...		Lus10013294 [exp]	13.9	0.8846
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10043251 [exp]	14.1	0.8699
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10024525 [exp]	14.9	0.8717
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10019619 [exp]	19.2	0.8924

Compare expression of checked genes

Lus10035091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.