Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02070 311 / 2e-98 C2H2ZnF ATIDD5 indeterminate(ID)-domain 5 (.1) AT2G02080 298 / 1e-95 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) AT1G14580 299 / 2e-95 C2H2ZnF C2H2-like zinc finger protein (.1.2) AT1G55110 287 / 6e-91 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT3G45260 282 / 5e-89 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G50700 282 / 6e-89 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT3G13810 281 / 3e-88 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) AT5G03150 278 / 8e-87 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT5G66730 275 / 7e-86 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT5G60470 273 / 2e-85 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031928 [exp] 398 / 4e-133 AT2G02080 271 / 2e-84 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) Lus10008396 [exp] 298 / 8e-94 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10007409 [exp] 291 / 5e-92 AT3G45260 308 / 4e-100 C2H2-like zinc finger protein (.1) Lus10036116 [exp] 290 / 1e-91 AT5G03150 307 / 8e-100 JACKDAW, C2H2-like zinc finger protein (.1) Lus10004840 [exp] 289 / 2e-90 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10041723 [exp] 285 / 2e-89 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10010820 [exp] 271 / 4e-87 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10019927 [exp] 278 / 6e-87 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10026497 [exp] 277 / 7e-87 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G142400 [exp] 326 / 7e-104 AT2G02070 409 / 2e-135 indeterminate(ID)-domain 5 (.1) Potri.010G099200 [exp] 322 / 1e-102 AT2G02070 384 / 4e-126 indeterminate(ID)-domain 5 (.1) Potri.010G099100 [exp] 320 / 1e-102 AT2G02070 369 / 4e-121 indeterminate(ID)-domain 5 (.1) Potri.008G142500 [exp] 311 / 3e-99 AT2G02070 407 / 6e-136 indeterminate(ID)-domain 5 (.1) Potri.006G129300 [exp] 285 / 2e-89 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.007G028800 [exp] 283 / 2e-88 AT5G66730 416 / 1e-140 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.005G215100 [exp] 280 / 5e-88 AT1G03840 328 / 1e-107 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.002G048000 [exp] 279 / 1e-87 AT4G02670 362 / 6e-122 indeterminate(ID)-domain 12 (.1) Potri.016G088500 [exp] 280 / 2e-87 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1) Potri.017G017100 [exp] 278 / 2e-87 AT1G03840 459 / 1e-158 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035092 pacid=23162602 polypeptide=Lus10035092 locus=Lus10035092.g ID=Lus10035092.BGIv1.0 annot-version=v1.0 ATGGCGACCAACAGGTTCATATGCGAGGTGTGCAACAAAGGGTTCCAGAGGGAGCAGAACCTGCAGCTCCACCGACGCGGGCACAACCTGCCGTGGAAGC TTAAGCAGAAGAACAACAAGGAAGTCGTGAAGCGCAAAGTCTACCTTTGCCCCGAACCGACCTGCGTCCACCACGACCCTTCTAGGGCTCTGGGGGACTT GACCGGGATCAAGAAGCACTACTATCGTAAGCACGGGGAGAAGAAGTGGAAGTGCGACAAGTGCTCTAAGCGTTACGCTGTCCAGTCCGACTGGAAGGCC CATTCGAAGACTTGCGGCACCCGCGAGTACCGCTGCGATTGTGGCACCCTCTTCTCCAGGAGGGACAGTTTCATCACTCACCGGGCATTTTGCGACGCGC TTGCTCAAGAGAGCGCTAGGAACCCTCCTCCTCCTTCCCTCTCCTCCATCGGCTCTCATCTCTACCCCCGGGCCGGGCGGGGCCGCCAAAAAAACGGAGC AGCCAATAACATGTCCTTAGGCATTTCATCCTCTTCCATCACTCATGACCACACTGCCGCTGACATCCTCCGACTAGGCGGCGGGGGAGGAGGAGGAGGT GGTGGTGGGGGTGGACAGTTCGATCATCTCCTCCCTCCTACTCCTTCACTTGGAGGAGGAGGTTCGTCATCGTTCCGGAACCCTCATTTGTCTTCCTCCT CCTCGGCAGCTGCTTTCTTCATGCAAGACTCCGACCACGGCGGCCACCACCAGAGCCAGAGCAATTACCAGCAGTATCACCATGCTCTTTTGCAGCAGTT TTCCGCCGCGGCTGATCCAAACAACACAGGTGGAAGCGGAGGGAATAATAATCATAATAATAACAACCTCTTCAACCTTGGTTTCCTTCCGAACTCGTCG ACCAGCATTGACAACTTCAACGGAGGAGGAGGGGAAGTTGGAGGTGATCATCATCATAATCAAATGATGGGATTGGTGGGGTCCAGCAGCAGTACAAGTA CCGTGCCTAGTCTGTTCAACTCATCTATTCATAATCATCATCAGATGAGCAACATGGTGGCGGCGCACATGTCGGCGACGGCACTTCTCCAAAAGGCGGC TCAGATGGGATCCACCACTAGCTCCAATCCCAACTCAACAACCAGCGCCTCATTACTCAGAAGCGCATTCGGCGCCGGCGGTGGAGGACTGTCTAATACC AATAACACCACCAACCCCGCCGCCACAAACAACAACAAATCTTCATCCTCATCCTCCGGTGGTGGCGGTGAAAAGAATCATCCTCCGCCGCCATCTCCAG CTCTGGGAGGGTTCGGGGCCTCATTTTTCGGAGACGCCGACGCCAACAACGGCAGCAACAATCTGCACGACCTAATGAACTCGTTCTCCTCGCCGGGGAA TAACAACTCATCCATCTTCAGCAGCAGTAACAACAGCAACAGCAAGTTACTGAGCGGTACATCAGCAGGTTCGGACAGGTTGACGAGAGATTTCCTAGGA GTTGGACACGCGGCGGCCGCAAGAGGCATTGCTACAAATTTAACCACCGGAGGCTTCTCGTCGCAGCCACATCAGCAGCAGCAGCAGCAGCTTGGGGGAG CTGTGGAGAGGAGCTCGTCGTTGGATTCAGAAAGGAACAATAACAATAACAGCAGCATGGGGAGTCATTCTTCTTTCGGGGGCAACCCTAACTTTCAATG A
AA sequence Show only first row Show all	>Lus10035092 pacid=23162602 polypeptide=Lus10035092 locus=Lus10035092.g ID=Lus10035092.BGIv1.0 annot-version=v1.0 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKNNKEVVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSDWKA HSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARNPPPPSLSSIGSHLYPRAGRGRQKNGAANNMSLGISSSSITHDHTAADILRLGGGGGGGG GGGGGQFDHLLPPTPSLGGGGSSSFRNPHLSSSSSAAAFFMQDSDHGGHHQSQSNYQQYHHALLQQFSAAADPNNTGGSGGNNNHNNNNLFNLGFLPNSS TSIDNFNGGGGEVGGDHHHNQMMGLVGSSSSTSTVPSLFNSSIHNHHQMSNMVAAHMSATALLQKAAQMGSTTSSNPNSTTSASLLRSAFGAGGGGLSNT NNTTNPAATNNNKSSSSSSGGGGEKNHPPPPSPALGGFGASFFGDADANNGSNNLHDLMNSFSSPGNNNSSIFSSSNNSNSKLLSGTSAGSDRLTRDFLG VGHAAAARGIATNLTTGGFSSQPHQQQQQQLGGAVERSSSLDSERNNNNNSSMGSHSSFGGNPNFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Lus10035092 [exp]	0	1
AT2G02080	C2H2ZnF	ATIDD4	indeterminate(ID)-domain 4 (.1...		Lus10031928 [exp]	1.0	0.7803
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10026497 [exp]	2.8	0.7091
					Lus10039807 [exp]	12.5	0.7377
					Lus10041330 [exp]	15.9	0.6457
AT4G38520			Protein phosphatase 2C family ...		Lus10025076 [exp]	18.0	0.5887
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Lus10033234 [exp]	18.4	0.7058
					Lus10001828 [exp]	28.9	0.6637
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10003367 [exp]	29.1	0.7144
AT5G02380		MT2B	metallothionein 2B (.1)		Lus10025350 [exp]	31.7	0.6812
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Lus10010061 [exp]	32.6	0.6862

Compare expression of checked genes

Lus10035092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.