Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52170 163 / 1e-46 HD HDG7 homeodomain GLABROUS 7 (.1) AT4G25530 155 / 8e-44 HD HDG6, FWA HOMEODOMAIN GLABROUS 6, FLOWERING WAGENINGEN (.1) AT3G61150 155 / 2e-43 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT4G00730 143 / 5e-39 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G05230 135 / 1e-36 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT4G04890 132 / 4e-35 HD PDF2 protodermal factor 2 (.1) AT4G21750 125 / 1e-32 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G79840 117 / 6e-30 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) AT1G17920 114 / 4e-29 HD HDG12 homeodomain GLABROUS 12 (.1) AT2G32370 113 / 9e-29 HD HDG3 homeodomain GLABROUS 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031933 [exp] 316 / 3e-105 AT3G61150 410 / 1e-133 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10038876 [exp] 226 / 2e-73 AT3G61150 296 / 1e-93 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10014997 [exp] 215 / 8e-66 AT4G00730 559 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10025940 [exp] 213 / 8e-65 AT3G61150 504 / 1e-168 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10027437 [exp] 195 / 6e-58 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005759 [exp] 184 / 9e-54 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005758 [exp] 155 / 6e-44 AT3G61150 419 / 3e-137 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10018359 [exp] 131 / 1e-35 AT4G04890 805 / 0.0 protodermal factor 2 (.1) Lus10039667 [exp] 129 / 3e-34 AT1G05230 1142 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G141800 [exp] 172 / 1e-49 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.012G139300 [exp] 167 / 5e-48 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G154700 [exp] 164 / 2e-46 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G075200 [exp] 160 / 3e-45 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.004G020400 [exp] 137 / 5e-37 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.002G230200 [exp] 137 / 5e-37 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.011G025000 [exp] 135 / 3e-36 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G152000 [exp] 134 / 6e-36 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.003G052400 [exp] 129 / 3e-34 AT1G79840 948 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) Potri.001G184100 [exp] 127 / 2e-33 AT1G79840 946 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035095 pacid=23162375 polypeptide=Lus10035095 locus=Lus10035095.g ID=Lus10035095.BGIv1.0 annot-version=v1.0 ATGAAAGAAATCAGTGATGGATCGAGTTTAAGCACAGCCAGCATGAGATTGCTTTCTGGGTGTGTCACAGAAGACTTGGCCCATGGTTGTTGTAAGTGGG AGAAGCGAGAGGCGGCGAATGTGAGCCAGGACGTGAGGATCGCAGTGAGGAAGAACTTGTCCGAGCCAGGGGATACATTGGGAGTTGCTTTGAGCGTCTC GAGTTCAATATGGCTCCCTGTCTCGCGGAGGACGCTGTTCGAGTTCCTAGTGAACGACGTGACGAGGAAGGATTGGGATGTTGTGCTTAATGGGGCGACA ATCAAGAACTTGGTTTGTCTCCCCAAGGCTCGTATTCATGGGAACTCTCCGTCCTTCGAGCTTCACAATGATCCTGCAATTATACTCCAAGAAATATGGA ATGACGAGTCATCATCCTTGCTGGTGTACACGCCCGTGAGCATGCAACTGTTGGAGATGGTGACGAGCGGAGGAGACAGCACCTTCGTGGGTTTATTGCC GTCCGGGTTTGCCATTTTCCCCGATGGAAATGATGGTGTTGCCAGTTTTGATGATGTAGGATTCCAGATACTGGCGAGCACCATTCCGACGACGAGGGTG AGAAGGAAATCGTTGCAGACAGCGAACGTGCTCCTCTCACGCACCGTGAAAAGAATCAAGGACGCCTTACAGATTGCGTGA
AA sequence Show only first row Show all	>Lus10035095 pacid=23162375 polypeptide=Lus10035095 locus=Lus10035095.g ID=Lus10035095.BGIv1.0 annot-version=v1.0 MKEISDGSSLSTASMRLLSGCVTEDLAHGCCKWEKREAANVSQDVRIAVRKNLSEPGDTLGVALSVSSSIWLPVSRRTLFEFLVNDVTRKDWDVVLNGAT IKNLVCLPKARIHGNSPSFELHNDPAIILQEIWNDESSSLLVYTPVSMQLLEMVTSGGDSTFVGLLPSGFAIFPDGNDGVASFDDVGFQILASTIPTTRV RRKSLQTANVLLSRTVKRIKDALQIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52170	HD	HDG7	homeodomain GLABROUS 7 (.1)		Lus10035095 [exp]	0	1
AT1G71530			Protein kinase superfamily pro...		Lus10001470 [exp]	1.0	0.9977
					Lus10033901 [exp]	1.4	0.9844
AT1G65590		HEXO3, ATHEX1	beta-hexosaminidase 3 (.1)		Lus10022251 [exp]	2.4	0.9782
					Lus10019218 [exp]	3.6	0.9444
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10008441 [exp]	4.9	0.9682
					Lus10042024 [exp]	5.2	0.9545
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10009003 [exp]	5.8	0.9352
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10009583 [exp]	5.9	0.9679
AT5G58980			Neutral/alkaline non-lysosomal...		Lus10021829 [exp]	7.0	0.9615
					Lus10014195 [exp]	8.5	0.9651

Compare expression of checked genes

Lus10035095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.