Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02010 835 / 0 GAD4 glutamate decarboxylase 4 (.1) AT5G17330 826 / 0 GAD1, GAD GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) AT2G02000 811 / 0 GAD3 glutamate decarboxylase 3 (.1) AT1G65960 803 / 0 GAD2 glutamate decarboxylase 2 (.1.2) AT3G17760 790 / 0 GAD5 glutamate decarboxylase 5 (.1.2) AT3G17720 258 / 2e-82 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G14730 170 / 1e-48 Cytochrome b561/ferric reductase transmembrane protein family (.1) AT5G38630 91 / 2e-20 ACYB-1 cytochrome B561-1 (.1) AT4G25570 85 / 3e-18 ACYB-2 Cytochrome b561/ferric reductase transmembrane protein family (.1) AT1G27980 82 / 3e-16 DPL1, ATDPL1 dihydrosphingosine phosphate lyase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019136 [exp] 872 / 0 AT2G02010 883 / 0.0 glutamate decarboxylase 4 (.1) Lus10028530 [exp] 819 / 0 AT5G17330 855 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Lus10034425 [exp] 624 / 0 AT5G17330 610 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Lus10031935 [exp] 269 / 3e-86 AT1G14730 284 / 8e-98 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10031934 [exp] 259 / 8e-84 AT2G02010 229 / 2e-74 glutamate decarboxylase 4 (.1) Lus10009116 [exp] 229 / 1e-66 AT2G02000 248 / 3e-75 glutamate decarboxylase 3 (.1) Lus10034427 [exp] 217 / 2e-66 AT1G14730 280 / 4e-96 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10034426 [exp] 195 / 7e-59 AT2G02010 227 / 4e-73 glutamate decarboxylase 4 (.1) Lus10039216 [exp] 92 / 7e-21 AT4G25570 305 / 6e-106 Cytochrome b561/ferric reductase transmembrane protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G141100 [exp] 861 / 0 AT2G02010 853 / 0.0 glutamate decarboxylase 4 (.1) Potri.010G100500 [exp] 858 / 0 AT2G02010 879 / 0.0 glutamate decarboxylase 4 (.1) Potri.004G075200 [exp] 846 / 0 AT5G17330 904 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.017G144421 [exp] 834 / 0 AT5G17330 880 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.004G075300 [exp] 831 / 0 AT5G17330 870 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.012G039000 [exp] 802 / 0 AT3G17760 816 / 0.0 glutamate decarboxylase 5 (.1.2) Potri.010G102400 [exp] 178 / 7e-52 AT1G14730 271 / 7e-93 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.008G138300 [exp] 172 / 9e-50 AT1G14730 252 / 2e-85 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.015G143700 [exp] 92 / 9e-21 AT4G25570 297 / 8e-103 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.017G111700 [exp] 91 / 2e-20 AT5G38630 321 / 2e-112 cytochrome B561-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00282 [flax] [poplar] Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain CL0328 [flax] [poplar] 2heme_cytochrom PF03188 [flax] [poplar] Cytochrom_B561 Eukaryotic cytochrome b561
Representative CDS sequence Show only first row Show all	>Lus10035096 pacid=23162507 polypeptide=Lus10035096 locus=Lus10035096.g ID=Lus10035096.BGIv1.0 annot-version=v1.0 ATGGTGCTCACTAAGATCACTTCCCAATCGGATGTCTCCGTCCACTCAACCTTCGCCTCCCGTTACGTGACGGAGTCACTCCCCCGTTACAAGATGCCGG ATAATTCCATCCCGAAAGAGGCCGCCTTCCAGATCATCAACGACGAGCTCATGCTCGACGGCAAGCCCAGGCTCAACCTCGCCTCTTTCGTCACCACTTG GATGGAGCCTGAGTGCGACAAGCTCATCATGGACTCCCTCAACAAGAACTACGTCGACATGGACGAGTACCCTGTCACCACCGAGCTCCAGAACCGCTGC GTCAACATCATCGCTCACCTCTTCAACGCCCCCCTCGGCGACGACGAGGCCGCCGTCGGTGTAGGCACCGTCGGATCCTCCGAGGCCATCATGCTTGCCG GCCTCGCCTTCAAGCGCAAGTGGCAGAACAAGCGCAAGGCTCAGGGCTTGCCCTTCGACAATCCTAACATCGTCACCGGCGCAAATGTTCAGGTGTGCTG GGAGAAATTCGCCCGATACTTCGAGGTGGAGCTGAAGGAAGTGAAGCTAACAGAAGGATACTACGTGATGGATCCACAGAAGGCAGTTGACTTGGTCGAC GAGAACACCATCTGCGTGGCTGCAATCCTAGGGTCGACACTCAACGGCGAGTTTGAAGACGTCAAGCGGCTCAACGACTTGCTAACAGAGAAGAACGCGA CCACCGGCTGGGACACGCCGATCCACGTCGACGCTGCCAGCGGCGGCTTCATCGCACCGTTCCTCTGGCCAGATCTGGAATGGGACTTCCGCCTACCGCT AGTGAAGAGCATCAACGTCAGCGGCCACAAGTACGGCCTCGTATACGCCGGCGTCGGATGGGCGATCTGGAGGAGTAAAGACGACCTCCCAGACGAATTG ATCTTCCACATCAACTACCTAGGAGCCGATCAGCCGACATTCACTCTCAATTTCTCGAAAGGATCGAGCCAGATCATAGCGCAGTACTACCAATTGATCC GATTAGGTTACGAAGGTTACCGAAACGTGATGGAGAACTGCCACGAGAACGCTAAAGTGTTGAAGCTTGGGCTGGAGAAGACCGGGAGATTCGAGATCGT TTCGAAGGATATCGGGGTGCCGCTGGTGGCGTTCTCGCTGAAGGACAACAGCCGGCACACGGAGTTCGAGATCGCGGATCTGCTGCGGAGGTTCGGGTGG ATTGTTCCGGCGTATACGATGCCGGCGGACGCGCAGCACATCACGGTGCTTAGGGTTGTGATTCGGGAGGACTTTTCGAGGGGTCTGGCGGAGAGGTTGG TTCAGGATATTACTACGGTGCTGCACGAGCTGGATACTATGCCGGCGAGGATGAGCGCGAAGATGGCGGTGATGGCGGAGGACGCGCTGCCGCGTCTGGG AGTAGGAACGGGACGGGTTCACCCGTTCCTCATGTTCTGCGGCTTCATCTTTCTTGTTGGCCAAGCTATGATGGCATACAAGACGGTACCAGCAACAAGG CAAGCCCAGAAAGCGATCCACATGGTACTCAACCTGACCGGACTGGCAGTAGGGATCGCCGGAATCGCGGCGGCGTTCAGGTTCCACGACATGGTTAATG CGGAGGACATGACCAGCATCCACTCGTGGATCGGCCTATCCACATTCTGCCTCTTCGGACTGCAGTGGCTCTTCGGCTTCTTCGGCTTCATGTACCCCAA GGCCAACTCCGACGCCAGGGGAAGGCTGATGGCGTGGCACATCACCGGCGGCCGGGTGCTGCTTTACATGGCAGGTGCTTCCCTCACCGGACTTATGGAG AGGTCGGTGTTACTCAATAACGTGATCCGTGGACATGGCGAATCACGGCTCATAAACTTCATCGGACTTTGTATCTTGCTCTTTGGCATCTTTGTTGACC TCTCTGTCGCACTTCACTATGTATAA
AA sequence Show only first row Show all	>Lus10035096 pacid=23162507 polypeptide=Lus10035096 locus=Lus10035096.g ID=Lus10035096.BGIv1.0 annot-version=v1.0 MVLTKITSQSDVSVHSTFASRYVTESLPRYKMPDNSIPKEAAFQIINDELMLDGKPRLNLASFVTTWMEPECDKLIMDSLNKNYVDMDEYPVTTELQNRC VNIIAHLFNAPLGDDEAAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAQGLPFDNPNIVTGANVQVCWEKFARYFEVELKEVKLTEGYYVMDPQKAVDLVD ENTICVAAILGSTLNGEFEDVKRLNDLLTEKNATTGWDTPIHVDAASGGFIAPFLWPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWAIWRSKDDLPDEL IFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGYEGYRNVMENCHENAKVLKLGLEKTGRFEIVSKDIGVPLVAFSLKDNSRHTEFEIADLLRRFGW IVPAYTMPADAQHITVLRVVIREDFSRGLAERLVQDITTVLHELDTMPARMSAKMAVMAEDALPRLGVGTGRVHPFLMFCGFIFLVGQAMMAYKTVPATR QAQKAIHMVLNLTGLAVGIAGIAAAFRFHDMVNAEDMTSIHSWIGLSTFCLFGLQWLFGFFGFMYPKANSDARGRLMAWHITGGRVLLYMAGASLTGLME RSVLLNNVIRGHGESRLINFIGLCILLFGIFVDLSVALHYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10035096 [exp]	0	1
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10031934 [exp]	3.2	0.7740
AT5G65630		GTE7	global transcription factor gr...		Lus10010525 [exp]	4.5	0.7462
					Lus10024490 [exp]	5.6	0.7848
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10013929 [exp]	7.5	0.7611
AT4G26455		WIP1	WPP domain interacting protein...		Lus10027087 [exp]	13.8	0.6882
					Lus10029087 [exp]	17.1	0.7528
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10040201 [exp]	19.4	0.7344
AT4G09830			Uncharacterised conserved prot...		Lus10028732 [exp]	19.7	0.7176
AT2G32440		ATKAO2, CYP88A4...	ARABIDOPSIS ENT-KAURENOIC ACID...		Lus10000026 [exp]	23.9	0.7128
AT4G35320			unknown protein		Lus10022985 [exp]	25.8	0.7195

Compare expression of checked genes

Lus10035096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.