Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48480 146 / 3e-43 Cysteine proteinases superfamily protein (.1) AT4G33620 61 / 1e-10 Cysteine proteinases superfamily protein (.1) AT1G60220 60 / 1e-10 ULP1D, OTS1 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) AT1G09730 55 / 5e-09 Cysteine proteinases superfamily protein (.1.2) AT1G10570 52 / 5e-08 ULP1C, OTS2 UB-LIKE PROTEASE 1C, OVERLY TOLERANT TO SALT 2, Cysteine proteinases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031938 [exp] 202 / 3e-67 AT3G48480 77 / 4e-18 Cysteine proteinases superfamily protein (.1) Lus10000917 [exp] 63 / 1e-11 AT1G09730 514 / 1e-169 Cysteine proteinases superfamily protein (.1.2) Lus10030867 [exp] 61 / 1e-10 AT1G60220 250 / 2e-76 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Lus10020445 [exp] 59 / 5e-10 AT4G33620 404 / 6e-129 Cysteine proteinases superfamily protein (.1) Lus10030622 [exp] 56 / 5e-09 AT1G60220 253 / 7e-77 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G090800 [exp] 198 / 2e-63 AT3G48480 228 / 8e-74 Cysteine proteinases superfamily protein (.1) Potri.010G180300 [exp] 174 / 3e-54 AT3G48480 278 / 3e-93 Cysteine proteinases superfamily protein (.1) Potri.002G105700 [exp] 69 / 2e-13 AT1G09730 580 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.007G115400 [exp] 68 / 2e-13 AT1G09730 427 / 3e-135 Cysteine proteinases superfamily protein (.1.2) Potri.017G044000 [exp] 66 / 9e-13 AT1G09730 452 / 4e-143 Cysteine proteinases superfamily protein (.1.2) Potri.005G155600 [exp] 65 / 4e-12 AT1G09730 551 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.010G040600 [exp] 55 / 5e-09 AT1G60220 410 / 3e-137 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02902 [flax] [poplar] Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10035097 pacid=23162572 polypeptide=Lus10035097 locus=Lus10035097.g ID=Lus10035097.BGIv1.0 annot-version=v1.0 ATGAAGATTTCTAAAAAAGAGTTAAAGAGACATCAACTAACATCAATATGTTTCTCAGGTAGTTTCCCCTCTCGCCTGAGATCGAATAGGGCAGCAGCTA AGCACACGATCGTACGTTCCACCAAAGTGACTCCTCCTCCACAGAAAATGAAGCTAGATAGTGCTCAATTCGATTCATATTTCAAGGGTCACTGGAACCT CCTGATTCTCTGTAACCTTGGTGAAAGCATGGAGTCCGAGACTGCAGTAAGACCGTGCATGCTATTGCTTGATTCACTTGAGGATGCTGGTCCTAGGCGT ATTGAACCAGATATAAGGAAGTTTCTGTTTGACATTTACAGATCGGAGGGCAGAGCTGAAACTAAACAGTCAATTCGTAGAATTCCTTTGTTAGTACCAA AGGTGCCACAGCAAACGAATGATGAAGAATGCGGGAAGTATGTTCTTTATTTCATCCATTTGTTTGTGCAAGGTGCTCCACAGAGTTTCAGCATGGAGGA CGACTACCCTAACTTTATGACTCGAGACTGGTTCACGCCTCAATGCTTGGAGCATTTCTTTGAGGAATTGGATCCCCTTGAGAAAGCTTGA
AA sequence Show only first row Show all	>Lus10035097 pacid=23162572 polypeptide=Lus10035097 locus=Lus10035097.g ID=Lus10035097.BGIv1.0 annot-version=v1.0 MKISKKELKRHQLTSICFSGSFPSRLRSNRAAAKHTIVRSTKVTPPPQKMKLDSAQFDSYFKGHWNLLILCNLGESMESETAVRPCMLLLDSLEDAGPRR IEPDIRKFLFDIYRSEGRAETKQSIRRIPLLVPKVPQQTNDEECGKYVLYFIHLFVQGAPQSFSMEDDYPNFMTRDWFTPQCLEHFFEELDPLEKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48480			Cysteine proteinases superfami...		Lus10035097 [exp]	0	1
AT3G07530			unknown protein		Lus10040483 [exp]	1.0	0.8942
AT5G38710			Methylenetetrahydrofolate redu...		Lus10003053 [exp]	4.2	0.8804
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10030252 [exp]	11.0	0.8926
AT3G07700			Protein kinase superfamily pro...		Lus10006363 [exp]	15.3	0.8640
AT5G66450			Phosphatidic acid phosphatase ...		Lus10028328 [exp]	15.5	0.8790
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Lus10023358 [exp]	15.5	0.8917
AT5G57740		XBAT32	XB3 ortholog 2 in Arabidopsis ...		Lus10015503 [exp]	24.5	0.8717
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10015379 [exp]	25.8	0.8875
AT1G05410			Protein of unknown function (D...		Lus10041201 [exp]	26.8	0.8916
AT1G10095			Protein prenylyltransferase su...		Lus10042569 [exp]	29.7	0.8812

Compare expression of checked genes

Lus10035097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.