Plant FIBer expression Database

Lus10035100 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G14700 398 / 1e-136 PAP3, ATPAP3 purple acid phosphatase 3 (.1.2)
AT1G25230 387 / 9e-133 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
AT3G17790 381 / 2e-130 ATACP5, ATPAP17, PAP17 purple acid phosphatase 17 (.1)
AT2G01890 380 / 4e-130 PAP8, ATPAP8 purple acid phosphatase 8 (.1.2)
AT2G01880 358 / 1e-121 PAP7, ATPAP7 purple acid phosphatase 7 (.1)
AT2G01905 132 / 9e-36 CYCJ18 cyclin J18 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031941
[exp]
587 / 0 AT1G14700 426 / 2e-150 purple acid phosphatase 3 (.1.2)
Lus10019133
[exp]
360 / 2e-122 AT2G01890 417 / 5e-147 purple acid phosphatase 8 (.1.2)
Lus10034429
[exp]
353 / 9e-120 AT1G14700 416 / 2e-146 purple acid phosphatase 3 (.1.2)
Lus10031940
[exp]
266 / 1e-86 AT2G01905 211 / 2e-68 cyclin J18 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G101900
[exp]
420 / 1e-145 AT3G17790 443 / 6e-157 purple acid phosphatase 17 (.1)
Potri.008G139100
[exp]
414 / 6e-143 AT1G14700 476 / 2e-169 purple acid phosphatase 3 (.1.2)
Potri.012G042200
[exp]
400 / 1e-137 AT3G17790 437 / 7e-155 purple acid phosphatase 17 (.1)
Potri.015G031400
[exp]
397 / 2e-136 AT3G17790 473 / 1e-168 purple acid phosphatase 17 (.1)
Potri.015G031300
[exp]
393 / 3e-135 AT1G14700 444 / 5e-157 purple acid phosphatase 3 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0163 Calcineurin PF00149 Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence
>Lus10035100 pacid=23162448 polypeptide=Lus10035100 locus=Lus10035100.g ID=Lus10035100.BGIv1.0 annot-version=v1.0
ATGGCGATCCCAAGCTGCAGCTTCTCCCAGCAACTGACGAGGCTGGAACACCAAGTGAAGGACGATGGGTCCCTCAGCCTTCTGGTTATTGGGGATTGGG
GACGACGTGGCCTTTTTAACCAATCTCAAGTTGCTTCCCAGATGGGAAGGATTGGGGAGGAATTAGATATTGATTTTGTGATATCGACGGGGGACAATTT
CTACGATGATGGGCTCAAAGGGCTGCATGATCCTGCTTTTGAAGACTCCTTCTCCAAAGTCTACGCTGCAAATAGCCTCCAGAAGCCTTGGTATACTGTT
CTGGGGAATCATGACTACAGAGGTGATGCATTGGCGCAATTGAATCCTGTACTGAGGAAGGTTGATAGCAGATGGCTTTGCCACAGATCTTTTATGGTCG
ACACAGAAATAGCGAGCTTCTTTTTGGTGGACACGACCCCATTTGTTGACAACTATTTCACCGACAAAACCCATACTTACGACTGGAGAGGAATCCATCC
TCGCAAAACCTACCTTGCAAACCTTCTCAAGGAGTTGGAGAATGCACTGAGAGAGAGCAGTGCAAGATGGAAAATAGTGGTGGGTCACCATCCTATCAGA
AGTGCCGGCCACCACGGCAACACTCAAGAGCTCATCCAACATCTCCTTCCTATTCTCAAGGCCAACAACGTGGATATGTACATCAACGGCCACGACCACT
GCTTGGAGCATATCGGCAGCCATGATAGTCCGATTCAGTATTTGACGAGCGGAGGAGGGTCGAAGGCGTGGAATGGAGACATAAAGAGCTACGACGAACG
TGTGATGAAGTTCTACTACGATGGTCAAGGGTTCGTTTCCATGCAACTTACGGATACTAACGTAGAGGTTTTGTTTCACGATGTTTTCGGCCAGCAACTA
AAAGTCACCCCGATCGTCAAGTACACAGCACTGTCTTTCTTCGCTGATCGATTTTCTCCATCTCTGTTCAGGCTACCTTTTGTAGCAGTCGTCAATACTT
GCTCGTTACAAATCAGTTATTTGTTAGCCAATGATCGTCAGATACATATTCTTCCTCCCATACGAGTTGGATCCTTGAAGTCATTGAGTGATAAGAGTAT
TAAGGAGCAACATTTCGCTACACGAGACTTCCTGGAAGCTGTAATGGACTATGAGATTGGTGCTAAAAACATCCTCTTTGTATTTTTTGAGGATCTCTTT
CATCAGTTCATAGGTGTTTCTAAGTTTGGCGAACTATTAAACTTTGAGACCTGCATGGATATCATCGATCTTCTTTATGAAAAGGAGTCTTGGATTCTTT
CTTGTTCTCTTTGTTCTCTTGCTGCATCAACCCTGGTTGCTTCATACCTCATAACAGTACCGAAACAAAGATGGGAGTTCCCTGTTCTTCCCTGGGGCAG
GATTGCTAAACTTGTACTTGAACTTATTCTTTCATATATGCTCCAATGGGTTTAA
AA sequence
>Lus10035100 pacid=23162448 polypeptide=Lus10035100 locus=Lus10035100.g ID=Lus10035100.BGIv1.0 annot-version=v1.0
MAIPSCSFSQQLTRLEHQVKDDGSLSLLVIGDWGRRGLFNQSQVASQMGRIGEELDIDFVISTGDNFYDDGLKGLHDPAFEDSFSKVYAANSLQKPWYTV
LGNHDYRGDALAQLNPVLRKVDSRWLCHRSFMVDTEIASFFLVDTTPFVDNYFTDKTHTYDWRGIHPRKTYLANLLKELENALRESSARWKIVVGHHPIR
SAGHHGNTQELIQHLLPILKANNVDMYINGHDHCLEHIGSHDSPIQYLTSGGGSKAWNGDIKSYDERVMKFYYDGQGFVSMQLTDTNVEVLFHDVFGQQL
KVTPIVKYTALSFFADRFSPSLFRLPFVAVVNTCSLQISYLLANDRQIHILPPIRVGSLKSLSDKSIKEQHFATRDFLEAVMDYEIGAKNILFVFFEDLF
HQFIGVSKFGELLNFETCMDIIDLLYEKESWILSCSLCSLAASTLVASYLITVPKQRWEFPVLPWGRIAKLVLELILSYMLQWV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G14700 PAP3, ATPAP3 purple acid phosphatase 3 (.1.... Lus10035100
[exp]
0 1
AT1G04130 TPR2, AtTPR2 tetratricopeptide repeat 2, Te... Lus10014250
[exp]
9.6 0.8378
AT2G46700 ATCRK3 CDPK-related kinase 3 (.1.2) Lus10009078
[exp]
15.0 0.8172
AT1G15420 unknown protein Lus10007894
[exp]
15.0 0.8124
AT5G04600 RNA-binding (RRM/RBD/RNP motif... Lus10007730
[exp]
27.7 0.7759
AT4G23050 PAS domain-containing protein ... Lus10024502
[exp]
36.6 0.7800
Lus10005797
[exp]
41.1 0.7910
AT1G56140 Leucine-rich repeat transmembr... Lus10020688
[exp]
44.7 0.7762
AT3G02080 Ribosomal protein S19e family ... Lus10020836
[exp]
47.9 0.7747
AT5G17370 Transducin/WD40 repeat-like su... Lus10001227
[exp]
49.9 0.7640
AT1G10520 AtPol{lambda} DNA polymerase {lambda}, DNA p... Lus10030656
[exp]
63.7 0.7676

Lus10035100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.