Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01913 39 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031943 [exp] 103 / 2e-28 AT2G01913 44 / 1e-05 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G140000 [exp] 49 / 8e-08 AT2G35585 61 / 4e-12 unknown protein Potri.010G101500 [exp] 48 / 2e-07 AT2G35585 60 / 2e-11 unknown protein Potri.001G135000 [exp] 38 / 0.0006 AT1G31940 194 / 1e-64 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035103 pacid=23162569 polypeptide=Lus10035103 locus=Lus10035103.g ID=Lus10035103.BGIv1.0 annot-version=v1.0 ATGAGCTTGAAGAGTTGGGAGGACGACAACCACCACCTGCAGCTGGGGGTCAATAACTACTGCTGCAATAACCCACAGGAAGGAATCATCAGCTGGGAAT TGGATGCCAACCAAGGAGGAGGAGGAGGAGTTGTGGATCCGATGGATCAGGTGGTGGTGTGGCCAGTTGAGCATCCGACGGAGCCGTTGGATGAAGACCA TCCTGTTAAATGCCCCATTCCTACCTCTTCCTTTACTACTCCTACTGCTCCTCAACCTCATCATCATCATGTTCATGATGTGTTGAGGAGAATGCCTTCT CTCCCACCCACCACCACCACCACCACCACCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAATACCATCTTCCATATCCTTC AACGTGCATCTCCCTAA
AA sequence Show only first row Show all	>Lus10035103 pacid=23162569 polypeptide=Lus10035103 locus=Lus10035103.g ID=Lus10035103.BGIv1.0 annot-version=v1.0 MSLKSWEDDNHHLQLGVNNYCCNNPQEGIISWELDANQGGGGGVVDPMDQVVVWPVEHPTEPLDEDHPVKCPIPTSSFTTPTAPQPHHHHVHDVLRRMPS LPPTTTTTTTNNNNNNNNNNNNNNNSNTIFHILQRASP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01913			unknown protein		Lus10035103 [exp]	0	1
AT2G01913			unknown protein		Lus10031943 [exp]	1.0	0.9069
AT5G62890			Xanthine/uracil permease famil...		Lus10010707 [exp]	3.5	0.9019
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Lus10012245 [exp]	4.5	0.8213
AT1G67720			Leucine-rich repeat protein ki...		Lus10036935 [exp]	4.6	0.8915
AT5G62890			Xanthine/uracil permease famil...		Lus10029191 [exp]	9.6	0.8767
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10036242 [exp]	11.6	0.8695
AT3G52490			Double Clp-N motif-containing ...		Lus10008970 [exp]	13.0	0.8617
AT1G70280			NHL domain-containing protein ...		Lus10032158 [exp]	13.3	0.8512
AT2G23950			Leucine-rich repeat protein ki...		Lus10019963 [exp]	14.5	0.8472
AT3G52490			Double Clp-N motif-containing ...		Lus10028849 [exp]	15.3	0.8497

Compare expression of checked genes

Lus10035103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.