Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01820 413 / 3e-134 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT1G66150 387 / 1e-124 TMK1 transmembrane kinase 1 (.1) AT1G24650 235 / 6e-68 Leucine-rich repeat protein kinase family protein (.1) AT3G23750 204 / 1e-56 Leucine-rich repeat protein kinase family protein (.1) AT5G59700 130 / 1e-31 Protein kinase superfamily protein (.1) AT3G46290 127 / 1e-30 HERK1 hercules receptor kinase 1 (.1) AT4G23180 125 / 2e-30 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT5G38990 125 / 3e-30 Malectin/receptor-like protein kinase family protein (.1) AT5G54380 124 / 7e-30 THE1 THESEUS1, protein kinase family protein (.1) AT5G28680 124 / 9e-30 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031944 [exp] 659 / 0 AT2G01820 1008 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019131 [exp] 491 / 8e-165 AT1G66150 981 / 0.0 transmembrane kinase 1 (.1) Lus10034432 [exp] 485 / 3e-162 AT1G66150 979 / 0.0 transmembrane kinase 1 (.1) Lus10039038 [exp] 416 / 4e-135 AT1G66150 1356 / 0.0 transmembrane kinase 1 (.1) Lus10027336 [exp] 416 / 1e-134 AT1G66150 1348 / 0.0 transmembrane kinase 1 (.1) Lus10010472 [exp] 382 / 3e-123 AT1G66150 1067 / 0.0 transmembrane kinase 1 (.1) Lus10003807 [exp] 383 / 1e-122 AT1G66150 1221 / 0.0 transmembrane kinase 1 (.1) Lus10021275 [exp] 233 / 6e-67 AT1G66150 804 / 0.0 transmembrane kinase 1 (.1) Lus10016952 [exp] 232 / 1e-66 AT1G66150 806 / 0.0 transmembrane kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G103000 [exp] 424 / 7e-139 AT2G01820 1050 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G137801 [exp] 416 / 1e-135 AT1G66150 1101 / 0.0 transmembrane kinase 1 (.1) Potri.017G134900 [exp] 413 / 2e-134 AT1G66150 1333 / 0.0 transmembrane kinase 1 (.1) Potri.004G084000 [exp] 399 / 4e-129 AT1G66150 730 / 0.0 transmembrane kinase 1 (.1) Potri.006G203500 [exp] 244 / 7e-71 AT2G01820 528 / 5e-173 Leucine-rich repeat protein kinase family protein (.1) Potri.016G070500 [exp] 239 / 4e-69 AT1G66150 778 / 0.0 transmembrane kinase 1 (.1) Potri.001G217700 [exp] 231 / 4e-66 AT1G66150 724 / 0.0 transmembrane kinase 1 (.1) Potri.009G020400 [exp] 230 / 8e-66 AT1G66150 511 / 5e-166 transmembrane kinase 1 (.1) Potri.018G141000 [exp] 214 / 4e-60 AT3G23750 650 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G073900 [exp] 213 / 6e-60 AT3G23750 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10035104 pacid=23162367 polypeptide=Lus10035104 locus=Lus10035104.g ID=Lus10035104.BGIv1.0 annot-version=v1.0 ATGATGAAGCTTCGGGACAATCTGGGTGACCTGAAGGAGTGGCCCGGATCCGACCCGTGCTCCGGCTGGGACGGAGTTGTTTGTTCCGGGAACAGGGTCA CCCGTATCAAGATCAGCGATAAGGGCATAAAGGGCTCCCTCCCTCCTGAGCTGGCTAACTTGACTTCGTTAGCCATCTTAGAAGTCGACGACAACCAGTT AACGGGTCCAATTCCGGATTTATCTGGGCTGACCTCGTTAACTTACCTCAACTTCATGCACAATCGTTTCGACTCCATCCCTCCGAATTTCTTCTCCGGT CTTTCCGCTTTGGAGGAAGTGTACCTCGACCACAATCCGCTTTCCGATTGGGTGATCCCGTCGACGTTGAAGGACTCGCCGTCGTTGAAGAATTTCTCCG CCGATAACAGCAGCCTTACTGGTTCTCTACCTGATTTCCTCTTCAATGGCGATACCTTCAGCGGGCTTAACCATCTGCTTAATGAATTGCTAGCGGCTGT TGAAGGGTTTGGATACCCTGCTGTTTTGGCTCAGAGTTGGAAAGGAAACGATCCTTGCAAGAATTGGGCTGGGATTCAGTGTTCTCCTTCTGGAGGAGAT ATTATAGTCATCAATTTGGATAATAAGGGGCTTACCGGTTCGATTTCGCCTAATTTCGCCTTGATTGCTTCGTTGCAGAAGCTGATTCTTTCGCGTAATG ATCTCATCGGTACCATACCAGATGAGCTGACTAAGTTGAGTAATCTTAAGGTGTTGGATGTTTCTGATAATGATATCCATGGGAAAGTTCCTTCATTCAA TGGTCCCAATGTGATTACTGCTGGGAATCCGAATATCGGTAAGGAGATTGTCGTTTCTCCTCCCGGGCAGACTCAGGATGGAAAAGGTGGCGGATCGGAT GGGAATAATAGTAGTGGTGGTGGAGGTAGTGGTAAGAGTTCTAGTCCTGCTGGGAAAGTTGCAGGTTCAGTTGCTGCAGTTGTTGTTCTTGTGGGTTTGG GCGGGGTTTGTTTCTTTCTCTACTGTAGGAAAAGGAAGCGATACAGCAAGGTCCAAAGTCCGAGCACAATGGTGGTTCATCCTCGCGATTCTGACAACCA CGATGCTGTGAAGATAACTGTTGCTGGATCGAGGTCAAACGGCTTCTCGGGCAGCATCAACACAGCAGCTAGCAGCAATTGTTCTGCTGATATCCACGTT GTGGAAGCAGGGAGCATGGTGATCTCTATTCAAGTGTTGAGAGAAGTGACTGATAACTTCAGTCCTGACAATATACTAGGAAGAGGCGGGTTTGGTACTG TTTACAAGGGCGAATTACATGACGGGACAAAAATCGCGGTGAAACGGATGGAGGCTTCCGTGGTGAGCGATAAGGGAATGGCGGAGTTCATGTCTGAGAT TGCAGTGCTGACCAAAGTTCGACATCGCCATCTTGTTTCGCTCCTCGGGTATTGCTTGGATGGGAATGAGAAGATCCTTGTCTATGAGTATATGCCTCAG GGAACTCTTAGTAGGTTCTTGTTTCACTGGAAGACCGAAGGGTTGAAGCCGTTGGAATGGACGAGGAGACTGACGGTTGCTTTGGATGTCGCTCGAGTTG GATGTTGCTAG
AA sequence Show only first row Show all	>Lus10035104 pacid=23162367 polypeptide=Lus10035104 locus=Lus10035104.g ID=Lus10035104.BGIv1.0 annot-version=v1.0 MMKLRDNLGDLKEWPGSDPCSGWDGVVCSGNRVTRIKISDKGIKGSLPPELANLTSLAILEVDDNQLTGPIPDLSGLTSLTYLNFMHNRFDSIPPNFFSG LSALEEVYLDHNPLSDWVIPSTLKDSPSLKNFSADNSSLTGSLPDFLFNGDTFSGLNHLLNELLAAVEGFGYPAVLAQSWKGNDPCKNWAGIQCSPSGGD IIVINLDNKGLTGSISPNFALIASLQKLILSRNDLIGTIPDELTKLSNLKVLDVSDNDIHGKVPSFNGPNVITAGNPNIGKEIVVSPPGQTQDGKGGGSD GNNSSGGGGSGKSSSPAGKVAGSVAAVVVLVGLGGVCFFLYCRKRKRYSKVQSPSTMVVHPRDSDNHDAVKITVAGSRSNGFSGSINTAASSNCSADIHV VEAGSMVISIQVLREVTDNFSPDNILGRGGFGTVYKGELHDGTKIAVKRMEASVVSDKGMAEFMSEIAVLTKVRHRHLVSLLGYCLDGNEKILVYEYMPQ GTLSRFLFHWKTEGLKPLEWTRRLTVALDVARVGCC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10035104 [exp]	0	1
AT1G77610			EamA-like transporter family p...		Lus10029663 [exp]	2.2	0.8629
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Lus10003926 [exp]	3.7	0.8239
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Lus10019313 [exp]	3.7	0.8504
AT4G31080			Protein of unknown function (D...		Lus10009546 [exp]	3.9	0.8458
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10031944 [exp]	5.5	0.8477
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Lus10039265 [exp]	8.2	0.8149
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Lus10006843 [exp]	10.1	0.8389
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Lus10015440 [exp]	10.4	0.8470
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Lus10028710 [exp]	11.0	0.8271
AT2G19450		RDS1, DGAT1, AT...	TRIACYLGLYCEROL BIOSYNTHESIS D...		Lus10017154 [exp]	11.8	0.8029

Compare expression of checked genes

Lus10035104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.