Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66150 286 / 4e-91 TMK1 transmembrane kinase 1 (.1) AT2G01820 266 / 1e-83 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT3G23750 236 / 1e-72 Leucine-rich repeat protein kinase family protein (.1) AT1G24650 204 / 4e-61 Leucine-rich repeat protein kinase family protein (.1) AT5G15080 127 / 2e-34 Protein kinase superfamily protein (.1) AT2G28940 124 / 3e-34 Protein kinase superfamily protein (.1.2) AT3G01300 124 / 5e-33 Protein kinase superfamily protein (.1) AT5G01020 122 / 1e-32 Protein kinase superfamily protein (.1) AT3G28690 120 / 2e-32 Protein kinase superfamily protein (.1.2.3) AT4G02010 122 / 3e-32 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031944 [exp] 429 / 1e-145 AT2G01820 1008 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019131 [exp] 317 / 1e-102 AT1G66150 981 / 0.0 transmembrane kinase 1 (.1) Lus10034432 [exp] 314 / 9e-102 AT1G66150 979 / 0.0 transmembrane kinase 1 (.1) Lus10039038 [exp] 290 / 3e-92 AT1G66150 1356 / 0.0 transmembrane kinase 1 (.1) Lus10027336 [exp] 288 / 3e-91 AT1G66150 1348 / 0.0 transmembrane kinase 1 (.1) Lus10003807 [exp] 268 / 3e-84 AT1G66150 1221 / 0.0 transmembrane kinase 1 (.1) Lus10010472 [exp] 252 / 6e-79 AT1G66150 1067 / 0.0 transmembrane kinase 1 (.1) Lus10021275 [exp] 237 / 9e-73 AT1G66150 804 / 0.0 transmembrane kinase 1 (.1) Lus10016952 [exp] 235 / 3e-72 AT1G66150 806 / 0.0 transmembrane kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G103000 [exp] 296 / 8e-95 AT2G01820 1050 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G134900 [exp] 293 / 9e-94 AT1G66150 1333 / 0.0 transmembrane kinase 1 (.1) Potri.004G084000 [exp] 291 / 6e-93 AT1G66150 730 / 0.0 transmembrane kinase 1 (.1) Potri.008G137801 [exp] 288 / 6e-92 AT1G66150 1101 / 0.0 transmembrane kinase 1 (.1) Potri.018G141000 [exp] 244 / 1e-75 AT3G23750 650 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G049200 [exp] 238 / 3e-73 AT3G23750 589 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G035900 [exp] 238 / 3e-73 AT3G23750 1044 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G203500 [exp] 238 / 5e-73 AT2G01820 528 / 5e-173 Leucine-rich repeat protein kinase family protein (.1) Potri.006G073900 [exp] 233 / 2e-71 AT3G23750 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G070500 [exp] 233 / 3e-71 AT1G66150 778 / 0.0 transmembrane kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10035105 pacid=23162456 polypeptide=Lus10035105 locus=Lus10035105.g ID=Lus10035105.BGIv1.0 annot-version=v1.0 ATGCGCGCAAAAGTTGCGGATTTTGGGTTGGTTCGTCTTGCTCCTGAGGGAGTGAACTCGATTTCGACAAGACTGGCTGGAACTTTCGGGTACATGGCCC CAGAATATGCAGTGACTGGACGAGTAACGATCAAGGTTGACGTCTTCAGCTTCGGGGTGATACTGATGGAACTAATCACAGGACGTAGAGCCCTAGACGA AACCGAGCCAGAGGACAGGCTCCATCTCGTACCCTTCTTCCGAAGGACGCTAATCGACAAGAAGGCGTTCAATCAGGTGATCGACTCGTCGATTGAGCAG AACGAGGAGACACTAGCCAGCATTTCCACTGTTGCTGACCTGGCAGGGCACTGCACGGCGAGGGAGCCATACCAGAGACCTGAAATGAGCCACGTGGTCA ACACACTCTCGTCCCTTGCTGAGCTCTGGAAACCGGACCGGTCTGGGCAGCAGGACGGGTACGACGATGACCTGGCGACGATCGACTTCGACATGACGTT GCCTCAAGCGCTGAAGAAGTGGCAGGAGATCGAAGGGGACGAAAGCAACATCTCCACTTTGGATACTACGCAGACTAGCATATCCACCCGGCCTCCTGGG TTTGCGGAGTCTTTCACATCAACGGATGCTCGGTAG
AA sequence Show only first row Show all	>Lus10035105 pacid=23162456 polypeptide=Lus10035105 locus=Lus10035105.g ID=Lus10035105.BGIv1.0 annot-version=v1.0 MRAKVADFGLVRLAPEGVNSISTRLAGTFGYMAPEYAVTGRVTIKVDVFSFGVILMELITGRRALDETEPEDRLHLVPFFRRTLIDKKAFNQVIDSSIEQ NEETLASISTVADLAGHCTAREPYQRPEMSHVVNTLSSLAELWKPDRSGQQDGYDDDLATIDFDMTLPQALKKWQEIEGDESNISTLDTTQTSISTRPPG FAESFTSTDAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10035105 [exp]	0	1
AT5G66280		GMD1	"GDP-D-mannose 4,6-dehydratase...		Lus10041823 [exp]	2.2	0.8383
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10028039 [exp]	4.7	0.7961
AT1G30760			FAD-binding Berberine family p...		Lus10038445 [exp]	6.2	0.7947
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040783 [exp]	6.5	0.8339
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025397 [exp]	9.2	0.8213
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032157 [exp]	10.4	0.8345
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Lus10018796 [exp]	11.3	0.7894
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035330 [exp]	11.8	0.8041
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009925 [exp]	12.2	0.8175
AT1G58170			Disease resistance-responsive ...		Lus10026176 [exp]	13.6	0.8100

Compare expression of checked genes

Lus10035105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.