Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24706 2105 / 0 EMB2793, AtTHO2 EMBRYO DEFECTIVE 2793, THO2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031945 [exp] 3385 / 0 AT1G24706 2191 / 0.0 EMBRYO DEFECTIVE 2793, THO2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G085000 [exp] 2550 / 0 AT1G24706 2284 / 0.0 EMBRYO DEFECTIVE 2793, THO2 (.1.2) Potri.019G054600 [exp] 2503 / 0 AT1G24706 2259 / 0.0 EMBRYO DEFECTIVE 2793, THO2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11732 [flax] [poplar] Thoc2 Transcription- and export-related complex subunit PF11262 [flax] [poplar] Tho2 Transcription factor/nuclear export subunit protein 2
Representative CDS sequence Show only first row Show all	>Lus10035106 pacid=23162395 polypeptide=Lus10035106 locus=Lus10035106.g ID=Lus10035106.BGIv1.0 annot-version=v1.0 ATGTCTCTCCCTCCGTTGGAGTGTGTGCATATCACAGAAGACCATCTCCGTGAATGGAAAAATGGCAACGCTAACTATAGGGTTACTGAAACTGTACCCG TGCTTCGTTTCCTCTATGAGCTCTGCTGGACGATGGTTCGGGGGGAATTGCCATTCCAAAAGTGCAAACTGGCTCTGGACTCCGTGGTGTTTCCTGATAC AGTGTCAAAGGGCGAGTTGAGCTCTACCTTCGCTGACATAATTACCCAAATGGCATTAGATCTTACGATGCCTGGAGAGTACCGCGCACGTCTAATAAAG CTGGCAAAGTGGTTAGTGGAATCTGCGCAGGTCCCATTGAGGCTGCTACAGGAGCGATGTGAGGAGGAGTTTCTGTTTGAGGGAGAGATGATAAAGATAA AGGCTCAAGATTTGAAGGGCAAGGAGGTCAGAGTGAATACTCGTCTTCTTTACCAGCAAACAAAGTTCAATTTGCTTCGAGAAGAGAGTGAGGGTTATGC CAAACTGATTACTCTTCTTTGCCGAGGATCGGACGATATAACTGCAAATGCATCAGCAGCTACAATAGGCATCATCAAGTCGTTAATTGGGCACTTTGAT TTGGACCCAAACCGTGTTTTTGATGTTGTTTTAGAGTGTTTTGAACTACAGCCGGACAGCAGGGTCTTTTTAGAATTAATTCCCATCTTCCCAAAGTCTC ATGTTTCACAGATTCTTGGATTTAAGTTTCAATATTATCAACGGATGGAGATAAACAATCTTGTACCCTTTGGACTCTATCAACTAACAGCTGTGCTGGT GATGAAGAACTTCATTGACCTAGACAGCATATATGCCCATATGCTTCCCAGGGATGATGATGCCATACAACATTACTGTGCATTTTCCACCAAGCAATTA GACGAGGCTAACAAGATTGGAAAAATAAATTTGGCTGCCACGGGGAAGGACCTTATGGATGAAGAGAAGCAAGGAGATGTAACTATTGATCTCTTTACGG CTATAGACATGGAAAGTGATGCGGTAGCTGAGCGGTCTGCTGAACTTGAGAAGAGTCAACCTCTGGGCCTACTTGGTGGTTTCCTTGCAGTAGATGACTG GTATCATGCTCAGATGTTGTTTGATCGCCTTTCTATGCTTAATCCCGTGGCACATGTTCAAATATGTAATGGTCTGTTTAGGCTCATAGAAAAGTCTATC TCTTCAGCATATGTTGCTGCTCGTGAAGCACATGCAGCTCGTGCAGCTGGTAATGATATTACGGCTCCAGTTTCTCTTCCGAAAGAACTCTTTCAGATGC TGACTGTTGTTGGACCTTACCTTTATCGCGATACAATATTGCTTCAGAAGGTGTGCAGAGTATTAAAGGAATATTACCTGTCAACTCGTAAACTTGTGAA TGATTGTGCTGGAGCTGCAAATTCTGAACCTTCATCTGGAAATCAAGCCTTGCGCCAGCTCCTAAGGGATGCTAGGTCAAGAATCGAGGAAGCTTTAGGA TCATGTATACTTCCTTCCCTACAGTTGATCCCTGCAAATCCAACAGTTGGACAAGAGATCTGGAAGGTTATGAGTCTCCTCCCATACGAGGCACGTTATC GATTATATGGCGAATGGGAAAAGGATGATGAGAGGAATCCGATGGTTTTGGCTGCAAAGCAAACAGCAAAGTTGGACACTAGAAGAATACTGAAAAGACT TGCAAAGGAAAATCTGAAACAGCTGGGTAGGATGGTTGCCAAACTTGCACATGCAAACCCCATGACCGTACTTCGAACTATTGTTCATCAGATTGAGGCA TACAGAGATATGATTACTCCAGTTGTAGATGCTTTCAAGTATCTAACACAGGCATGCATTTCTTTCTTTTTCCTTTTATCAAGACCTGGGCTTGAGTATG ACATCTTGGAATATGTGGTGATCGAGCGTTTGGCTCAGGGTGGTCGCGATAAGCTAAAAGATGATGGCCTTAATTTGTCGGACTGGCTCCAGTCTCTGGC TTCATTCTGGGGTCACCTGTGCAAGAAGTATCCGTCAATGGAGCTAAGGGGTCTTTTTCAGTATCTTGTGAACCAATTGAAAAAGGGACAAGGAATTGAG CTTCTTCTTCTCCAGGAGCTTATTCAGCAAATGGCAAATGTCCAGTACACGGAGAACCTGACAGAGGAACAGTTGGATGCTATGGCAGGGAGTGAAACCC TTCGTTTTCATGCTACTTCATTTGGAGTGCCACGGAATAATAAGGCATTAATTAAATCTACTGACAGGCTCCGAGAATCCTTGCGTCCAAAGGATGAACC AAATCTAGCCATCCCTCTGCTATTACTTATTGCTCAACATCGTTCAGTAATTATCATAAAGGCTGATGCGCCATATATTAAAATGGTTAGTGAGCAGTTC GATAGATGCCATGGGACTCTTCTTCAGTATGTGGAATTCCTTGGTAGCGCTGTGACCTCACCCACTACTTATGCAAAAATGATTCCTTCTCTGGATGATC TCGTTCACCAGTACCATCTTGATCCTGAGGTTGCTTTTCTGATATATCGTCCGGTAATGAGGCTCTTCAGGTGCGAGGGGAATTCTGAAGTTTTCTGGCC TTTAAAAGACAGTGATGCTAATGCCAGTACAGCAACTTCTAATATGGAGTCTGAACTAACTCGATATTCTGGAAATTTGATTCTTGATCTTGGGTCTCCC AAGAAGCCTATAATGTGGTCAGATCTTCTTGAAACTGTGAAAACCATGTTGCCTGCAAGAGCTTGGAATAGCCTCTCTCCTGATCTTTACGCAACCTTCT GGGGGCTAACACTCTATGATCTTTATGTTCCGAGAAGTCGCTATGAGTCAGAAATATCAAAGCTTTATGCTTCTCTCAAAGCTTTGGAGGAACTGTCTGA TAATTCAAGCTCAGGTATTGCTAAAAGGAAAAAGGACAAGGAGCGGATTCAAGAATCTCTAGATCGTTTGACTAGTGAACTCCAAAAACATGAAGATGAC GTTGCATCTGTTCGGCGGAGGCTTTCCCTTGAAAAAGACAAATGGCTGAGCTCTTGCCCTGATACCTTGAAAATTAACATGGAATTCCTTCAACGCTGTA TTTTTCCGCGTTGCACTTTCAGCATGCCTGATGCTGTCTATTGTGCTGTGTTTGTGCACACTCTTCATTCCCTTGGGACACCATTCTTTAATACTGTAAA TCACATTGATGTTCTCATATGCAAAACATTGCAACCAATGATATGTTGCTGTACTGAGTATGAAGCTGGTAGGCTCGGGCGATTTTTGTACGAGACGCTA AAGATTGCATACCATTGGAAGAGGGAAGAATCTATATACGAACGTGAGTGTGGAAACATGCCGGGTTTCGCTGTTTACTATAGGTTTCCGAACAGCCAAC GTGTCACCTATGGCCAATTTATTAAGGTACACTGGAAGTGGAGTCAGAGAATCTCACGGTTGTTGATACAATGCTTAGAATCATCTGAATACATGGAAAT TCGGAATGCTCTCATTTTGTTAACAAAAATTTCGAGTGTTTTCCCAGTGACCAAAAGGAGTGGGATTAACATTGAAAAGCGAGTAACAAGAATAAGAAAT GATGACAGAGAGGATCTGAAGGTGCTGGCAACTGGCGTTGCTGCTGCTTTGGCCTCTAGAAAGCCATCATGGGTTTCAGACGAAGAGTTTGGCATGGGAT ATCTTGAATTAAAGCCTCCATCTGCATCAAAATCGGTATCTGGAAATGCAGCCCCTATACAAAGTAGTTCTGTAGTTAATCTTTCTCAAAATGAACCTGG TAGTTCAAAAGCGCAGACCACTACAACACGCTATGGAGATTCTGGGAATTTATCTCGGGATCAGATAAGTAGAGGAAATGGGAAGCTAGACAAAATGGAA AGTGTCTCGCATTCTAAGTCTGACATTGGGAATAAGAAATTAAAGGGTAGTTCTTCTGCCAATGGGCCCGATGGTCAGTTATCTGCACTACCAGTTGGCA CTCAAGATGGGCCATCAAGATCATCTTCAAATCAGAAATACACAGAAGAGTCGGGTAATAGAGAACTGGATGAAACGAGTACTCGGGTGACTCAGAGGAG CTCTGCGGAATCGGAGCCAAAAGGTACTGCAAAACGGGCAATGGCTTCTGGATCTGTTGTTAAGACACTCAAGCAAGATTTCACTAAGGATGACGGGAAA AGTGGCAAAGCTGCCGGCAGAACTTCTGCCATTGATAGAGAGGTTTCTGGTGTAGTTGTTCTCACTTCAGCAGTTGCATCTAATGGCAATGCAGTTCCTA CATCTTCAAAATCAACTCCGTCTGCAAGATCATCTGATGTTCATCATAGTGAGTTGAAATCAGACGGTGGGGCTTCTAAATCTGTGGTCAAAGACAATGC ATCTGAAACTGCTGATGTGCAGAAGCTTTCTTCTAGGCTTGTTCATTCTCCTAGGAATGAAGCTTCTATTTCTACTTCAAGGTCTAGTGATAAATTGCTC AAGCGAGCAAGTCCTTCGGAAGAACCTGACAGATTAAGTAAACGTCGGAGAGGTGACACCGACTCCAAAGATTTAGAAGGTGAAGCTCGGTTTTCTGATC GAGACAAGTCTATTGATACTCGGCCTTTGGATCTTGATAAGGTGGCCAATGATGACCAGACTTTGTATAGGACGAGTGATAAACCCTCAGAAAGGTCCAA AGATAAGGTTGGTGATAGACATGAAAGAGATTATCGTGAAAGATCAGACCGCCTTGACAAGTCTGTCAGAGATGATAATCATAGTTTAGCTGAAAGACAG AGAGATAGGTCAATTGAAAGATATCGAGAGAGATCAGTTGATAGGGGACAAGAAAGAGGTGGTGATAGAGGCCATGACAGACTCTCTGAGAAAGCAAAAG ATGACCGGAACAAAGATGACAGGAATAAATCGCGGTATAGCGATTCATCTGCAGACAAATCTCACGATGATCGTTTTCGTGGTCAAAGTTTGCCTCCACC ACCACCCTTACCTCCTCATGTAGTTCCTCAATCAGTTGCTGCAAGTAGAAAGGATGATGACACTGATAGAAGGCTTGTAACTACCAGACATAGCCAAAGG CTTTCTCCAAGAATTGATGAGAAAGAACGAAGACGGTCAGAAGAAAATTCTACAGTCTCCCCAGATGATGCAAAGCGTAGAAGAGAAGACGATTTTCGGG AGAGAAAGCGAGAGGACCGTGAGGCGCCTACGGTAAAGGCGGAGGAGAGAGAAAGAGAAAGGGAAAGAGAGAAGGCGAATCTATTGAAGGAGGAGATGGA TGCAGCTGCAACGTCCAAGCGGCGGAAGCTTAAAAGAGAGCATTTGCCCCCAGGAGGAGTCGAAGCTGGTGAATATTCTCCCGTGGCAGCCCAACCACCT TCCCTTGCAATGGGAATGTCTCAATCGTATGACCTAAGAGAGAAGGCAGATCGCAAGGCATCCATGATCCAACGTACAGGATATGCCGAGGAACCTCCCG CCAGAGCTCATGGTAAAGAAGTGGCCAGCAAGGCTGCCCGGCGCGATGTCGATCCAATGTATGAACGAGATTGGGACGACGAAAAGAGGCAAAGAGCTGA ACAGAAGAGGAGGCATCGAAAGTAA
AA sequence Show only first row Show all	>Lus10035106 pacid=23162395 polypeptide=Lus10035106 locus=Lus10035106.g ID=Lus10035106.BGIv1.0 annot-version=v1.0 MSLPPLECVHITEDHLREWKNGNANYRVTETVPVLRFLYELCWTMVRGELPFQKCKLALDSVVFPDTVSKGELSSTFADIITQMALDLTMPGEYRARLIK LAKWLVESAQVPLRLLQERCEEEFLFEGEMIKIKAQDLKGKEVRVNTRLLYQQTKFNLLREESEGYAKLITLLCRGSDDITANASAATIGIIKSLIGHFD LDPNRVFDVVLECFELQPDSRVFLELIPIFPKSHVSQILGFKFQYYQRMEINNLVPFGLYQLTAVLVMKNFIDLDSIYAHMLPRDDDAIQHYCAFSTKQL DEANKIGKINLAATGKDLMDEEKQGDVTIDLFTAIDMESDAVAERSAELEKSQPLGLLGGFLAVDDWYHAQMLFDRLSMLNPVAHVQICNGLFRLIEKSI SSAYVAAREAHAARAAGNDITAPVSLPKELFQMLTVVGPYLYRDTILLQKVCRVLKEYYLSTRKLVNDCAGAANSEPSSGNQALRQLLRDARSRIEEALG SCILPSLQLIPANPTVGQEIWKVMSLLPYEARYRLYGEWEKDDERNPMVLAAKQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPMTVLRTIVHQIEA YRDMITPVVDAFKYLTQACISFFFLLSRPGLEYDILEYVVIERLAQGGRDKLKDDGLNLSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIE LLLLQELIQQMANVQYTENLTEEQLDAMAGSETLRFHATSFGVPRNNKALIKSTDRLRESLRPKDEPNLAIPLLLLIAQHRSVIIIKADAPYIKMVSEQF DRCHGTLLQYVEFLGSAVTSPTTYAKMIPSLDDLVHQYHLDPEVAFLIYRPVMRLFRCEGNSEVFWPLKDSDANASTATSNMESELTRYSGNLILDLGSP KKPIMWSDLLETVKTMLPARAWNSLSPDLYATFWGLTLYDLYVPRSRYESEISKLYASLKALEELSDNSSSGIAKRKKDKERIQESLDRLTSELQKHEDD VASVRRRLSLEKDKWLSSCPDTLKINMEFLQRCIFPRCTFSMPDAVYCAVFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCCTEYEAGRLGRFLYETL KIAYHWKREESIYERECGNMPGFAVYYRFPNSQRVTYGQFIKVHWKWSQRISRLLIQCLESSEYMEIRNALILLTKISSVFPVTKRSGINIEKRVTRIRN DDREDLKVLATGVAAALASRKPSWVSDEEFGMGYLELKPPSASKSVSGNAAPIQSSSVVNLSQNEPGSSKAQTTTTRYGDSGNLSRDQISRGNGKLDKME SVSHSKSDIGNKKLKGSSSANGPDGQLSALPVGTQDGPSRSSSNQKYTEESGNRELDETSTRVTQRSSAESEPKGTAKRAMASGSVVKTLKQDFTKDDGK SGKAAGRTSAIDREVSGVVVLTSAVASNGNAVPTSSKSTPSARSSDVHHSELKSDGGASKSVVKDNASETADVQKLSSRLVHSPRNEASISTSRSSDKLL KRASPSEEPDRLSKRRRGDTDSKDLEGEARFSDRDKSIDTRPLDLDKVANDDQTLYRTSDKPSERSKDKVGDRHERDYRERSDRLDKSVRDDNHSLAERQ RDRSIERYRERSVDRGQERGGDRGHDRLSEKAKDDRNKDDRNKSRYSDSSADKSHDDRFRGQSLPPPPPLPPHVVPQSVAASRKDDDTDRRLVTTRHSQR LSPRIDEKERRRSEENSTVSPDDAKRRREDDFRERKREDREAPTVKAEEREREREREKANLLKEEMDAAATSKRRKLKREHLPPGGVEAGEYSPVAAQPP SLAMGMSQSYDLREKADRKASMIQRTGYAEEPPARAHGKEVASKAARRDVDPMYERDWDDEKRQRAEQKRRHRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10035106 [exp]	0	1
AT5G09470		DIC3	dicarboxylate carrier 3 (.1)		Lus10024540 [exp]	1.0	0.9898
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10031945 [exp]	1.4	0.9873
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10025352 [exp]	1.7	0.9815
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10002974 [exp]	2.8	0.9778
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10008796 [exp]	3.7	0.9735
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10035973 [exp]	4.2	0.9764
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10028004 [exp]	5.1	0.9677
AT2G17930			Phosphatidylinositol 3- and 4-...		Lus10041910 [exp]	5.2	0.9700
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016882 [exp]	5.7	0.9695
AT1G16800			P-loop containing nucleoside t...		Lus10035717 [exp]	6.0	0.9692

Compare expression of checked genes

Lus10035106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.