Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040057 [exp] 336 / 4e-120 ND / Lus10017044 [exp] 323 / 2e-113 ND / Lus10003428 [exp] 322 / 1e-112 ND / Lus10005604 [exp] 310 / 2e-108 ND / Lus10022127 [exp] 303 / 1e-106 ND / Lus10032803 [exp] 305 / 2e-106 ND / Lus10000774 [exp] 256 / 1e-87 ND / Lus10008258 [exp] 249 / 2e-84 ND / Lus10039943 [exp] 247 / 3e-83 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02338 [flax] [poplar] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10035107 pacid=23162357 polypeptide=Lus10035107 locus=Lus10035107.g ID=Lus10035107.BGIv1.0 annot-version=v1.0 ATGCACCCGGTACTTGGGGACGTGTTTAACCCACGTGGGGATGGACATTGCGGATTTCGGTGCATTTCATACATAGTATCGGGCGGTGACGATAGCCAGT ATGTGGACATGCGGAGGCGTCTAATGGAACATGTCACAATGAACTGGTATGAACTTTACAGTAATGTCTATTCCACTGACTTAAACGGCGTCATTCACCG GTTGGGTTGGCTATGGGAAACTCCATGTGATGAAGCATGGTGGTTTTGGAATGTGGATCTTTTGGGGTATGCCACCATGTTTAACTGGACTTTCGTTGTC TTTGGACCCGGACTTCGCGGGGTACCTTATGGGGAGACTTATCTACCGTTGATAGTAGAAGAAGGCACAACGGCACCACTAGGTGTGTCGTATATCGTTT GCACCGGGAATCATTGGGTCGTACTCATGTTGGATGATGCTATTCCGGTGTTACCTATCCCGACAAGACCGCGCCAAACAAATGTGGGAACATGA
AA sequence Show only first row Show all	>Lus10035107 pacid=23162357 polypeptide=Lus10035107 locus=Lus10035107.g ID=Lus10035107.BGIv1.0 annot-version=v1.0 MHPVLGDVFNPRGDGHCGFRCISYIVSGGDDSQYVDMRRRLMEHVTMNWYELYSNVYSTDLNGVIHRLGWLWETPCDEAWWFWNVDLLGYATMFNWTFVV FGPGLRGVPYGETYLPLIVEEGTTAPLGVSYIVCTGNHWVVLMLDDAIPVLPIPTRPRQTNVGT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10035107 [exp]	0	1
					Lus10003428 [exp]	7.3	0.8350
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10036225 [exp]	9.5	0.8066
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10038364 [exp]	14.5	0.8326
AT1G29170		ATSCAR3, WAVE2	WASP \(WISKOTT-ALDRICH SYNDROM...		Lus10001897 [exp]	19.6	0.8314
AT4G14760			kinase interacting (KIP1-like)...		Lus10021908 [exp]	29.6	0.8321
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Lus10014807 [exp]	34.1	0.8103
AT5G42710			unknown protein		Lus10016315 [exp]	45.7	0.8036
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10015064 [exp]	51.2	0.7590
AT5G42710			unknown protein		Lus10010806 [exp]	51.3	0.7858
AT5G63930			Leucine-rich repeat protein ki...		Lus10011761 [exp]	52.5	0.7615

Compare expression of checked genes

Lus10035107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.