Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77620 500 / 3e-157 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G22010 58 / 4e-08 ATRFC1 replication factor C 1, replication factor C1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013372 [exp] 55 / 4e-07 AT5G22010 1128 / 0.0 replication factor C 1, replication factor C1 (.1) Lus10028430 [exp] 45 / 0.0003 AT5G66130 532 / 0.0 RADIATION SENSITIVE 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G177000 [exp] 768 / 0 AT1G77620 642 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G084700 [exp] 751 / 0 AT1G77620 634 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G213900 [exp] 69 / 2e-11 AT5G22010 1117 / 0.0 replication factor C 1, replication factor C1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF03215 [flax] [poplar] Rad17 Rad17 P-loop domain
Representative CDS sequence Show only first row Show all	>Lus10035108 pacid=23162561 polypeptide=Lus10035108 locus=Lus10035108.g ID=Lus10035108.BGIv1.0 annot-version=v1.0 ATGGATCGATCGGCGGAGGTAGACGGACTCGTGACAGTGGTAGTCGCCGCCGCCTCGGGAGAGATCGACCAGCCGGCCGGGAGATCAGTTCGCCGTCGAC TGGTTCAGTCTACGCTGTTCCCTCACAAATGTCCCGAAGTTGTTAAATCTGGCGGGGAAAAGAAGAAACGGGACGATGAAGAAGGTAATGTGAATGATAA AGAAGAAGATGAGGACTACGGAAGTAGTCAAGGGAAGAAGAGAAAAGTAGCTCGCAAACGAAAGGCGTCAAATTCTCAGCCGAGAACTCCTAATAAGTCA AAGGGGAGGTCATCAGCTAATTCTACGCCAAAGAAGAACCAGACCATCAACGGTATAGACTTAACGGAGGATAAAATTGTGACTCCTCCATCCATGCCTA ATGTGCGATTACAAGCTAAAATGGCTGATGAGGAGTATTCACAGAAGTTTGCTGGGAAACAATTGCACCCATTTTTCTCACTGCGGAAAGGAAGTAAGAA ACAAGGGATCACTGATGTCCTGAGAGGATGTGACGAATCTAATGCACCACCTATTCATGTATTTGAAAAGGATGAGGGTGATGTTGCGTCTCTTGATTGG AGACATTGGAGACTTAATGAGAAACCCTTCATGGATTGTGCTGGGCACACGGATTTCTCCTCTATACCTGTTGCTGATTGTAAAGTTTCCCTGGACCATC ATTTTTCTCAAGGGAAAAAATTGCCTGACGACTCTGCAGCTGTGTCCACTATTTCATCTAATGTGCGAGAGACATGCTGTCGAATTCTAACAGACGTGGA GTCAAGTCACAAGCCCGTTGGATCTGGTCTCTGTGGTGGGCAAGTGATAGGGGCAAGCGTAGAGAAACAAAGTGTTTACCACCATGAGAGGGTGATACGG CACTCTGTAGATGGTGATATTCAGTCTGATAATAGATTATGGGCAGACAAATACCAGCCAAAGATGGCCAGTGAGGTCTGTAGTAACATTGAAGCAGTGA CTTTTGTGAATGAGTGGCTTCACAATTGGCATCAAAAGGGTGATGGTGCTGGCAAAGTTTATCCCGTTGAAGTTGTCTCAGATGAGGAAGATGCTAATTA TAGTTGTCCCGGAAGTGACTCAGAAAACATAAATGAAATTGGTGGTCCTAAGCCAGTGCTTTTGGTTACTGGACCTGCCGGGAGTGGGAAATCAGCAGCC ATTTATGCTTGTGCGAAGGAACAGGGTTACAAAATTTTGGAGGTTAATACCTCTGATTGCCGGAATGGTGCTTTTGTGAGGCGTGAATTTGGAGAAGCAT TGGAGTCGCAATTCTTTAAAAGGTCGATTGACAGTCCTGTCAAACCTCAAGGACAGTACTCGATGAAATTTTCCTTTTCCCTCCCGCAACCTAAAGTGGT TCAAGACCTTGAGAACAAAGTGAGCAACTTGGAATCTGTAACAGATGACCATAACTTCCATGGAGTCACTGAAACATGCGGGAAGTCTGCTTCTTTAGAC CATGCAACTAAAACGTTGATTCTATTTGAGGATGTTGATGTTGTCTTCCCGGAAGATGCTGGTTTCATTACTGCTATCCAACACATAGCTGAAACTGCAA AAGGCCCTGTGATACTGACCAGCAACAGTGACAATCCTGTTCTTCCTGACAAATTGGATAGGCTGTATGTGAATTTCAATTTGCCTACAAAGAAGGATCT TTTACAGCATGTCTATACGGTTTGTTCCTCAGAAAATATTGATTCTGAACGTCATGTCATAGAGCAAATAGTTGATTGTTGTCATGGAGATATCAGGAAG GCAATTATGCATGTCCAATATTGGTGCCAGGGTAAACAAATCAGGAAAGCAGGCACACCAAGATTATTGCGACGATTGATAGTTGATCCTGAGGCTGCTC ACTATCTACTGCCAAAGATAATTCCCTGGGGTTGTCCTTCACAGTTTTCTGAGTTGATTGAGAAGGAGATCATGAGTTCACTATCACAGTCAACAGAAAG TTATCTTGCTACAAGGGCCAGCGAAGAAACACTAGAAACAGTGGATTGTGATTTATTGACATGTGGATTTGGGGAAGACCGAATAGCTGCCAAGAAGGCA GCAATGCTGGGCAGGAATGGCCTTGAATTTGATTGCAATAACCTCACAGCTGTAAGCGCAGCACATGATGCTTTCAATTGCTCAAGTAGCCCAGTGTCAT TTGCCAGGAAAAACTATAGAAGAAAGCTTGATCACGTTGTGTCTTCAGATTCTGAAGATGATACTGTAAGTTTTATGACACCAGGAAGAATTCCCAGTCT TGACATGAGCAGGCAAGACTACTTAAGCAGAGCAGCTGACTTTCAAATGAGTGCCAGGGCAGAGGAGTTAAAGGAAAATTGTTATCAGAATTCAGTATCT GCAGTAGATTTACACACAAATCACATCTGCCAATCAATAGATGTCTCATGTGTGCCAGAATCAACATTTTTTGTTCCAGAAACTGAAATTGATGATGGCA CAAGGGTGTCAGTTGGTAAACTGAATGGCACTTCTGAAGAAGTGTCAGTGACCAATGGGTTTGATCTCAACGTATCACCAGTGGAAGAAAATCTTGATGA TCGGATATCTGAATCCTATGAAGGTTTTGAATTTTTAGGCAACACTTACAATGTACAGTCAACCTCTTCACAACAAGGGATCGAAGACGATTCAACGGGA ACTGTTTCCAGAGAGTATCAAGTGATGGATGAGTGTAGTCGAATAGATTTCAATAAGAAACACCAGATAGTAGAGGAACTTGGACCCTTCAATGCGACTG ATGCGGTTCGAGAGACCTGGAAAAAGCTTCGTCTTCGTCATGCAGACCTAAGACAATTGGTTGCATTGGAAGATGAAAATGCTTCAGAAACTGTAAGGCT TGCTCAGGGCATAAGCAATCTAGTTTCAGAAGCTGAAATACTGCTTTCAAAGTGCCAGTTGCTAGATTCCTTGGAGCTCTTTATGGCTCTTTCCGAGGTG TCAGATCCATCCAGCCAGCATGATGAGCAGCGAGAGATGACATCTACAATTGTGCATCATGGCTTTGGCTGCTATGTTGATGAAATCAATGTTTTGAGGC TTAAAATGGGTTCCGGGAAAGTAAACTTAACTCGGGAAATGTTATCTACCATCGACATGGTGACAACCGATCCTTCCTTGATGGGACGGGACCCAAGCAA TAGAATGACATCGTTTGGGGAACCAGATAGAACGGCAGCCCTCCCTGAAAGTGGAAGATTGACAAATAGGGGGAACCAGGCTAATAATATGTTGGATATA GTTCACGCCATTGTCCCTACAAGATCACACACTACGATTAAAGGTGAAGCATTTCAGGATTATCTCTCCGCTCTGAGGCACATATCTAGATCAGAAGCTT CACGTTTATCAGGACAAGGGATTGGTGTTACAAGAAGACGGAGGGGACGAGCATCTCGACATTACTTGAGTATCGGCTCATTGTCACTATCTTCTGACGA GATATCGCTGCTGGACAAGTGTAACTGTTACGGGGATGCTACCGGTGACAATTAG
AA sequence Show only first row Show all	>Lus10035108 pacid=23162561 polypeptide=Lus10035108 locus=Lus10035108.g ID=Lus10035108.BGIv1.0 annot-version=v1.0 MDRSAEVDGLVTVVVAAASGEIDQPAGRSVRRRLVQSTLFPHKCPEVVKSGGEKKKRDDEEGNVNDKEEDEDYGSSQGKKRKVARKRKASNSQPRTPNKS KGRSSANSTPKKNQTINGIDLTEDKIVTPPSMPNVRLQAKMADEEYSQKFAGKQLHPFFSLRKGSKKQGITDVLRGCDESNAPPIHVFEKDEGDVASLDW RHWRLNEKPFMDCAGHTDFSSIPVADCKVSLDHHFSQGKKLPDDSAAVSTISSNVRETCCRILTDVESSHKPVGSGLCGGQVIGASVEKQSVYHHERVIR HSVDGDIQSDNRLWADKYQPKMASEVCSNIEAVTFVNEWLHNWHQKGDGAGKVYPVEVVSDEEDANYSCPGSDSENINEIGGPKPVLLVTGPAGSGKSAA IYACAKEQGYKILEVNTSDCRNGAFVRREFGEALESQFFKRSIDSPVKPQGQYSMKFSFSLPQPKVVQDLENKVSNLESVTDDHNFHGVTETCGKSASLD HATKTLILFEDVDVVFPEDAGFITAIQHIAETAKGPVILTSNSDNPVLPDKLDRLYVNFNLPTKKDLLQHVYTVCSSENIDSERHVIEQIVDCCHGDIRK AIMHVQYWCQGKQIRKAGTPRLLRRLIVDPEAAHYLLPKIIPWGCPSQFSELIEKEIMSSLSQSTESYLATRASEETLETVDCDLLTCGFGEDRIAAKKA AMLGRNGLEFDCNNLTAVSAAHDAFNCSSSPVSFARKNYRRKLDHVVSSDSEDDTVSFMTPGRIPSLDMSRQDYLSRAADFQMSARAEELKENCYQNSVS AVDLHTNHICQSIDVSCVPESTFFVPETEIDDGTRVSVGKLNGTSEEVSVTNGFDLNVSPVEENLDDRISESYEGFEFLGNTYNVQSTSSQQGIEDDSTG TVSREYQVMDECSRIDFNKKHQIVEELGPFNATDAVRETWKKLRLRHADLRQLVALEDENASETVRLAQGISNLVSEAEILLSKCQLLDSLELFMALSEV SDPSSQHDEQREMTSTIVHHGFGCYVDEINVLRLKMGSGKVNLTREMLSTIDMVTTDPSLMGRDPSNRMTSFGEPDRTAALPESGRLTNRGNQANNMLDI VHAIVPTRSHTTIKGEAFQDYLSALRHISRSEASRLSGQGIGVTRRRRGRASRHYLSIGSLSLSSDEISLLDKCNCYGDATGDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77620			P-loop containing nucleoside t...		Lus10035108 [exp]	0	1
AT1G06590			unknown protein		Lus10034176 [exp]	1.4	0.9194
AT5G63960		EMB2780	DNA binding;nucleotide binding...		Lus10020862 [exp]	4.1	0.9317
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10026154 [exp]	4.9	0.8884
AT1G49980			DNA/RNA polymerases superfamil...		Lus10020986 [exp]	7.9	0.8562
AT1G78540		STATLB, ATSHB	STAT-TYPE LINKER-SH2 DOMAIN FA...		Lus10013716 [exp]	8.7	0.8380
AT4G31880			unknown protein		Lus10018332 [exp]	9.0	0.9164
AT5G55230		ATMAP65-1	microtubule-associated protein...		Lus10032567 [exp]	9.5	0.8954
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10039130 [exp]	9.6	0.9140
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10004055 [exp]	10.2	0.8541
AT3G07610		IBM1	increase in bonsai methylation...		Lus10015260 [exp]	14.1	0.8685

Compare expression of checked genes

Lus10035108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.