Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24190 279 / 2e-86 AtHsp90-7, HSP90.7, SHD SHEPHERD, HEAT SHOCK PROTEIN 90-7, Chaperone protein htpG family protein (.1.2) AT5G52640 134 / 3e-34 AtHsp90-1, ATHS83, ATHSP90.1, HSP83, HSP81-1 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) AT5G56000 132 / 1e-33 Hsp81.4, AtHsp90.4 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) AT5G56030 132 / 1e-33 AtHsp90.2, HSP90.2, ERD8, HSP81-2 HEAT SHOCK PROTEIN 90.2, EARLY-RESPONSIVE TO DEHYDRATION 8, HEAT SHOCK PROTEIN 90.2, heat shock protein 81-2 (.1.2) AT5G56010 132 / 1e-33 AtHsp90-3, HSP81-3 HEAT SHOCK PROTEIN 90-3, heat shock protein 81-3 (.1) AT2G04030 120 / 2e-29 Hsp88.1, AtHsp90.5, HSP90.5, CR88, EMB1956 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) AT3G07770 113 / 5e-27 Hsp89.1, AtHsp90-6 HEAT SHOCK PROTEIN 90-6, HEAT SHOCK PROTEIN 89.1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033135 [exp] 323 / 3e-103 AT4G24190 1224 / 0.0 SHEPHERD, HEAT SHOCK PROTEIN 90-7, Chaperone protein htpG family protein (.1.2) Lus10034535 [exp] 322 / 6e-103 AT4G24190 1225 / 0.0 SHEPHERD, HEAT SHOCK PROTEIN 90-7, Chaperone protein htpG family protein (.1.2) Lus10027303 [exp] 137 / 4e-35 AT5G52640 1204 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10039281 [exp] 135 / 1e-34 AT5G52640 1226 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10027517 [exp] 135 / 1e-34 AT5G52640 1230 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10039008 [exp] 134 / 2e-34 AT5G52640 1204 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10014964 [exp] 131 / 4e-33 AT5G52640 1177 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10038845 [exp] 131 / 4e-33 AT5G52640 1175 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10027518 [exp] 122 / 5e-32 AT5G52640 478 / 2e-166 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G241100 [exp] 281 / 2e-87 AT4G24190 1227 / 0.0 SHEPHERD, HEAT SHOCK PROTEIN 90-7, Chaperone protein htpG family protein (.1.2) Potri.001G466000 [exp] 127 / 1e-31 AT5G56000 1132 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.004G073600 [exp] 126 / 1e-31 AT5G52640 1021 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Potri.017G146600 [exp] 126 / 2e-31 AT5G52640 1174 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Potri.006G002800 [exp] 124 / 5e-31 AT5G56000 1115 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.016G003400 [exp] 124 / 5e-31 AT5G56000 1148 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.001G286700 [exp] 122 / 4e-30 AT5G56000 1118 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.014G164900 [exp] 120 / 2e-29 AT3G07770 1182 / 0.0 HEAT SHOCK PROTEIN 90-6, HEAT SHOCK PROTEIN 89.1 (.1) Potri.010G136800 [exp] 119 / 5e-29 AT2G04030 1232 / 0.0 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) Potri.008G112700 [exp] 117 / 3e-28 AT2G04030 1201 / 0.0 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00183 [flax] [poplar] HSP90 Hsp90 protein
Representative CDS sequence Show only first row Show all	>Lus10035109 pacid=23162345 polypeptide=Lus10035109 locus=Lus10035109.g ID=Lus10035109.BGIv1.0 annot-version=v1.0 ATGAATCCTCCCACCACGGAGATGCCCAACAACAAACCTGATCAGAGAATCAAGTTCATATACAAACGCCTTCAAGAGGTTTGTGTCTTCTGCGGACGAT TAGGCCATGAGATGAGAGACTGTCGTGAAAGGGCAGAGGGAGTCCGCCTAGGCTTCTATGGTGACCCCTCAGGTGACTATGATGACTTAAAAGTTAAAAC CGCCCTGCAGCAGCCACTGGTAGCTATTTCTGACGACTCCAGAGAGATCAGATTGCAACAACAGATTGGGGAGGCCCAGAGGCTTTCAAAGTACACCGAC GGAAGTTTCCAACCCCATCTCTCAACTCTCCGTCTGGTGGCTAGCCTATGTCATGGAGTCATTTCACTGCCGAAGGTGATGTGGAGTTCAAAGCTGTTCT CTTTGTGCCCCCTAAAGCTCCTCATGATCTCTATGACAGTTATTACAACACTTATCCGTAAAGCACTTGATATGATCCGTAAGATGTATGAGGAAGATCC TGATGAGTCAACTGACAAAGACAAGAAAGACGTTGAGGAATCCAGTGATAATGAAAAGAAAGGTCAGTACATAAGGTTCTGGAATGAGCTTGGTAAATCC ATCAAGCTTGGCATTATTGAGTATGCAGCTAACAGAAATCGCTTGGCGAAGCTTCTTCGATTCGAAAGTTGGATGGGAAAATTAACTTCTCTTAATCAGT ACATCTCAAGAATGAAATCAGGACAGAAAGACATCTTCTATATCACAGGATCTGACAAGGCACAACTTGAGAAGTCTCCTTTCCTCGAGATGCTTGTAAA GAAGGGTTACGAGGTCAGTTACTTCACAGATGCAGTAGATGAATACTTGATGCAATATTTGATGGATGACGAGAACAAGAAGTTCCAGAACGGAGCACTT GCGAGCTGGAACGTAGACGACGTGAAGGTAAGCAACCGTTTAGCTGACACGTCTTGTGTAGTGGTGACAAACAAGAAGATGTTACGGAGAGGGAATATGG AGAGGATAATGCACTCTCAGACTCTAACAGACGCTAGCAAGCAAGCCTACGTGAGTGGGAAGAGGCTCCTTGAGATCAACCCTTGTCACCCATCGTCAAA GAATTACGTGAAAGAGTGGCCAAGGATGCTGAGGATGAGAGTGTGA
AA sequence Show only first row Show all	>Lus10035109 pacid=23162345 polypeptide=Lus10035109 locus=Lus10035109.g ID=Lus10035109.BGIv1.0 annot-version=v1.0 MNPPTTEMPNNKPDQRIKFIYKRLQEVCVFCGRLGHEMRDCRERAEGVRLGFYGDPSGDYDDLKVKTALQQPLVAISDDSREIRLQQQIGEAQRLSKYTD GSFQPHLSTLRLVASLCHGVISLPKVMWSSKLFSLCPLKLLMISMTVITTLIRKALDMIRKMYEEDPDESTDKDKKDVEESSDNEKKGQYIRFWNELGKS IKLGIIEYAANRNRLAKLLRFESWMGKLTSLNQYISRMKSGQKDIFYITGSDKAQLEKSPFLEMLVKKGYEVSYFTDAVDEYLMQYLMDDENKKFQNGAL ASWNVDDVKVSNRLADTSCVVVTNKKMLRRGNMERIMHSQTLTDASKQAYVSGKRLLEINPCHPSSKNYVKEWPRMLRMRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10035109 [exp]	0	1
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10010230 [exp]	1.4	0.9358
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10016941 [exp]	2.8	0.9078
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10026838 [exp]	3.6	0.8543
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10004309 [exp]	4.0	0.8656
AT1G68490			unknown protein		Lus10027557 [exp]	4.0	0.8985
AT1G04480			Ribosomal protein L14p/L23e fa...		Lus10008065 [exp]	4.6	0.8701
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10004841 [exp]	6.9	0.9076
AT5G45190			Cyclin family protein (.1.2)		Lus10018272 [exp]	7.7	0.8867
AT1G61100			disease resistance protein (TI...		Lus10025112 [exp]	8.5	0.8654
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10022572 [exp]	8.8	0.8705

Compare expression of checked genes

Lus10035109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.