Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58250 223 / 8e-74 EMB3143 EMBRYO DEFECTIVE 3143, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031946 [exp] 404 / 1e-144 AT5G58250 227 / 5e-75 EMBRYO DEFECTIVE 3143, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G161000 [exp] 233 / 1e-77 AT5G58250 236 / 2e-79 EMBRYO DEFECTIVE 3143, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10674 [flax] [poplar] Ycf54 Protein of unknown function (DUF2488)
Representative CDS sequence Show only first row Show all	>Lus10035110 pacid=23162493 polypeptide=Lus10035110 locus=Lus10035110.g ID=Lus10035110.BGIv1.0 annot-version=v1.0 ATGAAGATGCTGAGTGCAGTTGTTGGATCATTCGTTACCCCTTCATCTTTCTCCCCTGCTTCTTCTCCCCACCTCATTCCCTCCCTCCGTCACCACAATC CTACAATCCTCCTCCGATCCTCCGTCATATCATCTCTTCCTCCTCATCTCCGATTCCCCTCCTCCGCCTCCATTAAGCCCTCCGTCGTCGCCGCTGTCGC CGTCGACTCTAATCAACCCCCCGCCTCCTCCGACAGCAAGGAGGTAGAGAGGAAGAGGTATTACTTTCTGGTGGCGAATGCAAAGTTCATGCTGGACGAG GAAGAACACTTCCAGGAGCAGCTGTTCGAGCGGCTTCGCTACTACGGAGAGCGCGACTTGAAGCAGGATTTCTGGCTTGTCATCGAGCCTACCTTCTTGA ACAGTTTCCCTGACATTACCAAACGATTGAACAGGCCTGCTGTTGCTTTAGTCTCCACTAATGGACCCTGGATCACGTTCATGAAGCTGAGACTGGACAG GGTGCTGGCTAATAGTTATGACGCAGACACCCTAGAGGAAGCATTGGCATCGACCCCCAATACTACTGTGGAGTTTGACAAGCCTGATAAGTGGTCCGCG CCATATCCCAAGTATGAATCTGGATGGTGGGAGACCTTCTTGCCTGCTGCTGCTGCTGCTCAATCTACATAA
AA sequence Show only first row Show all	>Lus10035110 pacid=23162493 polypeptide=Lus10035110 locus=Lus10035110.g ID=Lus10035110.BGIv1.0 annot-version=v1.0 MKMLSAVVGSFVTPSSFSPASSPHLIPSLRHHNPTILLRSSVISSLPPHLRFPSSASIKPSVVAAVAVDSNQPPASSDSKEVERKRYYFLVANAKFMLDE EEHFQEQLFERLRYYGERDLKQDFWLVIEPTFLNSFPDITKRLNRPAVALVSTNGPWITFMKLRLDRVLANSYDADTLEEALASTPNTTVEFDKPDKWSA PYPKYESGWWETFLPAAAAAQST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58250		EMB3143	EMBRYO DEFECTIVE 3143, unknown...		Lus10035110 [exp]	0	1
AT5G58250		EMB3143	EMBRYO DEFECTIVE 3143, unknown...		Lus10031946 [exp]	1.0	0.9531
AT2G14880			SWIB/MDM2 domain superfamily p...		Lus10013893 [exp]	1.7	0.9395
AT4G34290			SWIB/MDM2 domain superfamily p...		Lus10002106 [exp]	2.0	0.9457
					Lus10040882 [exp]	4.0	0.9375
AT3G53460		CP29	chloroplast RNA-binding protei...		Lus10002222 [exp]	4.7	0.9244
AT4G11175			Nucleic acid-binding, OB-fold-...		Lus10035773 [exp]	6.5	0.9351
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10024430 [exp]	7.5	0.9331
AT3G53460		CP29	chloroplast RNA-binding protei...		Lus10023191 [exp]	8.5	0.9286
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015111 [exp]	8.9	0.9245
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10021693 [exp]	8.9	0.9368

Compare expression of checked genes

Lus10035110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.