Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13980 1388 / 0 Glycosyl hydrolase family 38 protein (.1.2.3) AT3G26720 1249 / 0 Glycosyl hydrolase family 38 protein (.1.2) AT5G66150 1094 / 0 Glycosyl hydrolase family 38 protein (.1) AT5G14950 270 / 2e-75 GMII, ATGMII golgi alpha-mannosidase II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012577 [exp] 1608 / 0 AT5G13980 1483 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10036074 [exp] 1571 / 0 AT5G13980 1372 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10041516 [exp] 1452 / 0 AT5G13980 1347 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10012578 [exp] 1181 / 0 AT3G26720 1405 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Lus10025960 [exp] 882 / 0 AT5G66150 1097 / 0.0 Glycosyl hydrolase family 38 protein (.1) Lus10014259 [exp] 783 / 0 AT3G26720 959 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Lus10039457 [exp] 270 / 2e-75 AT5G14950 1573 / 0.0 golgi alpha-mannosidase II (.1) Lus10014507 [exp] 253 / 2e-69 AT5G14950 1552 / 0.0 golgi alpha-mannosidase II (.1) Lus10015337 [exp] 239 / 1e-64 AT5G14950 1506 / 0.0 golgi alpha-mannosidase II (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G143600 [exp] 1487 / 0 AT5G13980 1535 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.012G106500 [exp] 1321 / 0 AT5G13980 1437 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.002G238200 [exp] 1250 / 0 AT3G26720 1477 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Potri.007G056300 [exp] 1150 / 0 AT5G66150 1428 / 0.0 Glycosyl hydrolase family 38 protein (.1) Potri.001G350400 [exp] 292 / 7e-83 AT5G14950 1678 / 0.0 golgi alpha-mannosidase II (.1) Potri.017G073900 [exp] 270 / 3e-75 AT5G14950 1672 / 0.0 golgi alpha-mannosidase II (.1) Potri.008G117400 [exp] 69 / 5e-12 AT5G14950 470 / 1e-157 golgi alpha-mannosidase II (.1) Potri.012G106401 [exp] 74 / 2e-06 AT5G13980 71 / 1e-10 Glycosyl hydrolase family 38 protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0158 [flax] [poplar] GH_CE PF01074 [flax] [poplar] Glyco_hydro_38N Glycosyl hydrolases family 38 N-terminal domain CL0103 [flax] [poplar] Gal_mutarotase PF07748 [flax] [poplar] Glyco_hydro_38C Glycosyl hydrolases family 38 C-terminal domain CL0599 [flax] [poplar] GH57_38_middle PF09261 [flax] [poplar] Alpha-mann_mid Alpha mannosidase middle domain
Representative CDS sequence Show only first row Show all	>Lus10035111 pacid=23162570 polypeptide=Lus10035111 locus=Lus10035111.g ID=Lus10035111.BGIv1.0 annot-version=v1.0 ATGATTGGGCTAAGACCAAGACCATGGTTGTTCACTGCTATTACTACTGCTGCGGCTGTGATGTTTATGATGGTGGTTTTGATTCCAAGCGGGGAATCAA AGTACATTGTTTACAATACTTCTCAGGGCGTAGTTGCTGATAAGCTCAATCTTCACTTGGTTCCTCACACCCATAATGATGTTGGGTGGTTAAAGACTGT TGACCAGTACTATGTTGGCGCCAACAATTCGATCCAGGCTGCTTGCGTGCAAAACATTTTGGATTCTCTCATTCCAGCATTGCTTGCTGATAAGAACCGC AAGTTTATCTATGTTGAAATTGCATTTTTCGAGCGATGGTGGAATGATCAGAGTGAAGCAATGAAGCAAGTAGTCAAGAAGCTTGTGGCCTCGGGTCAGC TAGAATTCATAAATGGAGGTATGTGCATGCATGACGAGGCAACAACCCATTACATCGACATGATTGACCAAACAACTCTAGGACATCGGTTCCTCAAAAG GGAGTTTGGTGTGACACCCAGGATCGGATGGCAAATCGATCCTTTCGGACATTCTGCAGTCCAAGCTTATTTGTTGGGAGCAGAAGTTGGTTTCGACTCT TTATTCTTCGCCAGGATAGATTACCAAGACAGGGAAAAGAGGAAGGGCGAAAAAGGTTTGGAAATGGTCTGGCAAGGCTCCAAGAGTCTTTCTTCATCGC AGATTTTCGCTGGTGCATTCCCAACAAACTATGACCCTCCACCAGGCGGATTCTACTTAGAAATTAATGATATCTCCCCTATTGTACAAGATGAGATTGG TTTGTCTGATTACAATCTTCCAGAAAGAGTAAATGCCTTTGTTGATGCTGCTCTATCGCAGGCGAATATTACTCGAACAAATCATATCATGTTTACAATG GGAACAGATTTCCAGTATCAGTATGCAACCACTTGGTTCCGCCCAATGGATAAGCTCATTCATTATTTGAACTTGGATGGACGTGTGAATGCGTTTTACT CTACTCCATCCATATATACTGATGCCAAGCATTCTGCAAGCGAAACCTGGCCGCTGAAAACCGAAGACTTTTTCCCTTATGCAGATCGTGCAAATGCTTT CTGGACAGGATACTTTACAAGTCGGCCAGCATTGAAACGCTATGTCAGAGTTATGAGTGGCTATTACTTGGCTGCAAGGCAACTAGAATTTTTCACAGGA CGGGGTAGTGTAGGTCCAAATACTGACTCATTGGCAGATGCACTGGCAATCGCTCAGCATCATGATGCTGTTACCGGGACAGAAAAGCAACATGTAGCTA ATGATTATGCCGAACGCCTTGCAACTGGCTACACAGAGGCCGAAAAGGTGGTTGCAGCTTCACTCAGTTGCTTGTATGGTTTCAAGTCTCATGCACGATG TCAGAGCCAGATAACCAAATTTGAACAGGCAAATTGTCCTCTTCTGAATATTACTTACTGTCCTGTGTCTGAAAATATCGATACCGGAAAGAAGTTGATT GTTTTGGCCTATAATTCTCTTGGCTGGTTAAGAGATGAAGTGATCCGAATTCCGGTTGCTAGTGATGATGTGATCGTCCATGATCCTGAGGGGAAAGAAG TAGAAGCCCAACTCATTCCTTTAGTGGATGCCTATATAAGATTGAGAAACTTCCATGTCAAGGCATACCTTGGCCCAACACCGGCTGGAACTCCGAAATA TTGGCTTGCGTTCAGAGTCTCCGTACCACCTCTTGGTTTCAGCACATATACAGTCTCAACTACCAAAAATGCAGGTGCTTCCTCAACCAAACCATCTGTC TACAAATCCAAAATAAGCCAGAAGTATATTGCTCAAGTGGGTCAAGGAAATTTGAAGCTCAACTGTTCTGCTTCCCATGGGAAGCCAACTAGCTATACAA ATGACAGGAGCTTGGTGAAGGAGCACGTATATCAGTCGTATAGTTACTATGGTGGATATAATGGAACCAATGACAAAAGTTCTCAGAATAGCGGGGCATA CATCTTCCGTCCAAATGGGACATATCCTATAGAACCTAAAAAGCAGGTCCCTTTCGCTATTATTCGTGGACCAGTAGTAGAGGAAATACATGAAGAGATA AGCAAATGGATCTATCAGGTTACTAAACTATACAAAGGAAAAGAGCATGTTGAAGTTGAGTTTATAGTCGGTCCCATCCCGATTGATGATGGAGTTGGAA AAGAAGTTGTAACTCGGATCACGACTTCATTAAATACCAACAAAACGTTCTATACAGATTCTAATGGACGTGATTTCATCAAAAGGATTCGTGACTATAG AACAGACTGGGACCTGGAAGTGACTGAACCAGTTGCTGGAAACTATTACCCGATTAATCTGGGAATTTATGTTGAGGACGATGAAAAAGAACTCTCGGTT CTGGTGGATCGTGCTCTCGGTGGAACTAGCATTAAGGATGGACAAATAGAGCTGCTACTTCACAGGAGACTGCTGCTTGATGATTCCAGAGATTCTGGAG GCCTTGATGAAGCCCTGAATGAAACAGTGTGTGCTCATGACAAATGCATGGGATTAACTATACAAGGAACATACTATTACAGAATAGACCCCATAGGAGA AGGTGCAAAGTGGCGTAGATCATTCGGGCAGCATATATATTCACCCTTGCTGCTAGCCTTTGCAGAAGAGGAAATGGATAATCCAACAAAGTTAGATGCA ACTACCTTCTCAGGCTTGGATCCTTCCTACACTTTACCTGATAATGTTGCTGTTGTGACCCTCCAGGAACTAGACGATGGGAAGGTGCTTCTTCGGTTAG CTCATCTATATGAGGCTGGAGAAGACAAGGATCTTTCGGTGAAGACGACTGTGGAACTAACAAAGTTGTTCCATGGAAAGAAAATAGAGAAGGTGGTGGA AATGAGCTTGTCTGCCAACCAAGAAAAGGCAGAAATGGAGAAGAAAAGACTTGTCTGGAAATCATCATCATCATCAAAAGAAAAAGAGGGAGTGAAAAGG GGATCGGCAGTTGATTACAAGAAGCTCAAGGTTGAACTATATCCAATGGAAATTCGGACCTTTCTCATTGATATTGTTATTCGACAGTAA
AA sequence Show only first row Show all	>Lus10035111 pacid=23162570 polypeptide=Lus10035111 locus=Lus10035111.g ID=Lus10035111.BGIv1.0 annot-version=v1.0 MIGLRPRPWLFTAITTAAAVMFMMVVLIPSGESKYIVYNTSQGVVADKLNLHLVPHTHNDVGWLKTVDQYYVGANNSIQAACVQNILDSLIPALLADKNR KFIYVEIAFFERWWNDQSEAMKQVVKKLVASGQLEFINGGMCMHDEATTHYIDMIDQTTLGHRFLKREFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDS LFFARIDYQDREKRKGEKGLEMVWQGSKSLSSSQIFAGAFPTNYDPPPGGFYLEINDISPIVQDEIGLSDYNLPERVNAFVDAALSQANITRTNHIMFTM GTDFQYQYATTWFRPMDKLIHYLNLDGRVNAFYSTPSIYTDAKHSASETWPLKTEDFFPYADRANAFWTGYFTSRPALKRYVRVMSGYYLAARQLEFFTG RGSVGPNTDSLADALAIAQHHDAVTGTEKQHVANDYAERLATGYTEAEKVVAASLSCLYGFKSHARCQSQITKFEQANCPLLNITYCPVSENIDTGKKLI VLAYNSLGWLRDEVIRIPVASDDVIVHDPEGKEVEAQLIPLVDAYIRLRNFHVKAYLGPTPAGTPKYWLAFRVSVPPLGFSTYTVSTTKNAGASSTKPSV YKSKISQKYIAQVGQGNLKLNCSASHGKPTSYTNDRSLVKEHVYQSYSYYGGYNGTNDKSSQNSGAYIFRPNGTYPIEPKKQVPFAIIRGPVVEEIHEEI SKWIYQVTKLYKGKEHVEVEFIVGPIPIDDGVGKEVVTRITTSLNTNKTFYTDSNGRDFIKRIRDYRTDWDLEVTEPVAGNYYPINLGIYVEDDEKELSV LVDRALGGTSIKDGQIELLLHRRLLLDDSRDSGGLDEALNETVCAHDKCMGLTIQGTYYYRIDPIGEGAKWRRSFGQHIYSPLLLAFAEEEMDNPTKLDA TTFSGLDPSYTLPDNVAVVTLQELDDGKVLLRLAHLYEAGEDKDLSVKTTVELTKLFHGKKIEKVVEMSLSANQEKAEMEKKRLVWKSSSSSKEKEGVKR GSAVDYKKLKVELYPMEIRTFLIDIVIRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10035111 [exp]	0	1
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10041595 [exp]	6.5	0.7993
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10024838 [exp]	11.4	0.8276
AT1G35530			DEAD/DEAH box RNA helicase fam...		Lus10006082 [exp]	13.0	0.8216
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10024371 [exp]	19.4	0.8206
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10000468 [exp]	26.7	0.7789
AT5G45650			subtilase family protein (.1)		Lus10007083 [exp]	27.6	0.8054
AT1G48870			Transducin/WD40 repeat-like su...		Lus10033525 [exp]	28.3	0.7449
AT5G47380			Protein of unknown function, D...		Lus10004732 [exp]	31.7	0.8025
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10003268 [exp]	34.9	0.7881
AT1G12340			Cornichon family protein (.1)		Lus10004023 [exp]	50.4	0.7429

Compare expression of checked genes

Lus10035111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.