Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63890 775 / 0 HISN8, ATHDH HISTIDINE BIOSYNTHESIS 8, histidinol dehydrogenase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031985 [exp] 893 / 0 AT5G63890 752 / 0.0 HISTIDINE BIOSYNTHESIS 8, histidinol dehydrogenase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G465300 [exp] 815 / 0 AT5G63890 790 / 0.0 HISTIDINE BIOSYNTHESIS 8, histidinol dehydrogenase (.1.2) Potri.011G163400 [exp] 801 / 0 AT5G63890 790 / 0.0 HISTIDINE BIOSYNTHESIS 8, histidinol dehydrogenase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00815 [flax] [poplar] Histidinol_dh Histidinol dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10035112 pacid=23162354 polypeptide=Lus10035112 locus=Lus10035112.g ID=Lus10035112.BGIv1.0 annot-version=v1.0 ATGGACTCCCAGTTTCTGTGCTTTAAGCGGAGCAGCTTGCTGTGTAAACCTATCCTCCCGCCGCAATCTCGTTCATTTTCTGCAGCTTCCATTTTCAGCT TCCCGCCATATTCAGTTCAATCCAAAGGTATTCCGCAAGGAGAGGTGTCGGCGCTTTTTGTATTCCTTCCCGTCCACATTTTTAATGCGCTGTTGAACTT GACAGGGTTCGCTTTCAGCAGAGTGAAGTGTGCAATGAAGTCTTATCGCTTATCTGATTTAAGCCCTGTTGAGGTCAATGGCCTGAAAGCTCGTCCTCGA ATTGATTTCACTTCAATTTTCAGTGTGGTAAACCCAATTGTCGATGAGGTTCGCACAGGAGGTGACGCTGCAGTTAAAGCGTACACTGCAAAGTTTGATA AAGTTAACTTGGACAGTGTTGTTATGAATGTTTCCGAGCTTCCTATTCCGGAGCTTGATGCAAATGTGAAGGAAGCATTTGACGTGGCATATGAGAACAT ATATGCATTTCATCTTGCTCAAAAATCCGTTGAAACAAATGTTGAGAACATGAAAGGTGTTAGGTGCAAAAGGGTGGCTAGAAGCATTGGTTCTGTTGGT CTCTATGTTCCAGGAGGGACTGCAGTACTACCTTCAACAGCTTTGATGCTTTCAGTTCCTGCCCAGATTGCTGGGTGCAAAACTGTTGTTCTTGCAACTC CACCGAGTCAGGATGGCAGCATATGCAAGGAGGTATTGTACTGTGCCAAGAAGGCTGGTGTGACCCATATTCTAAAAGCTGGAGGGGCTCAGGCTATCTC CGCCATGGCGTGGGGAACAGAGTCCTGCCCCAAGGTTGAGAAAATATTTGGACCAGGAAATCAGTATGTTACTGCTGCAAAAATGATTCTCCAGAACAGT GAAGCTATGATCTCCATTGACATGCCTGCTGGACCTTCTGAGGTTCTGGTCATTGCCGACAAACACGCAAATCCCGTACACATAGCTGCAGATTTATTAT CTCAGGCTGAACATGGTCCTGATAGCCAGGTCGTTCTTGTAATTGCTGGGGATGGAGTTGACATGGAAGCTATCGAACAAGAAATTAGTAAACAGTGTGG GAGTCTTCCTAGAGGAGAGTATGCTATGAACGCTCTGAGCCACAGTTTTACTGTTCATGCTCATGATATGATTGAGGCCATCTCCTTTTCAAATTTGTAC GCACCCGAGCATTTGATAATCAATGTGGAAAATGCTGAGAAATGGGAGGGTCTCATTGAGAATGCTGGCTCTGTGTTCTTGGGTCAGTGGACTCCGGAAA GTGTGGGAGATTATGCTAGTGGGACAAACCATGTCCTGCCAACCTATGGTTATGCGCGGATGTATGGTGGGGTATCGTTGGACTCATTCCTGAAATACAT GACGGTGCAGTCGCTGACTGAAGAGGGCCTGAGAAAGCTCGGTCCATATGTTGCAACCATGGCTGAGGTGGAAGGACTTGATGCCCACAAGAGAGCAGTG ACTCTTAGACTCCAGGATCTTGAATCCAGGCAACAACAGCATGCAAATGCATCATAG
AA sequence Show only first row Show all	>Lus10035112 pacid=23162354 polypeptide=Lus10035112 locus=Lus10035112.g ID=Lus10035112.BGIv1.0 annot-version=v1.0 MDSQFLCFKRSSLLCKPILPPQSRSFSAASIFSFPPYSVQSKGIPQGEVSALFVFLPVHIFNALLNLTGFAFSRVKCAMKSYRLSDLSPVEVNGLKARPR IDFTSIFSVVNPIVDEVRTGGDAAVKAYTAKFDKVNLDSVVMNVSELPIPELDANVKEAFDVAYENIYAFHLAQKSVETNVENMKGVRCKRVARSIGSVG LYVPGGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAGVTHILKAGGAQAISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNS EAMISIDMPAGPSEVLVIADKHANPVHIAADLLSQAEHGPDSQVVLVIAGDGVDMEAIEQEISKQCGSLPRGEYAMNALSHSFTVHAHDMIEAISFSNLY APEHLIINVENAEKWEGLIENAGSVFLGQWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLRKLGPYVATMAEVEGLDAHKRAV TLRLQDLESRQQQHANAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63890		HISN8, ATHDH	HISTIDINE BIOSYNTHESIS 8, hist...		Lus10035112 [exp]	0	1
AT3G21110		PUR7, ATPURC	PURIN C, purin 7 (.1.2)		Lus10025652 [exp]	23.6	0.8594
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10032553 [exp]	69.7	0.8219
AT5G63040			unknown protein		Lus10027687 [exp]	77.2	0.8360
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10010196 [exp]	85.3	0.8386
AT5G42500			Disease resistance-responsive ...		Lus10021084 [exp]	101.2	0.8175
					Lus10020157 [exp]	113.9	0.8355
AT1G21340	DOF	AtDof1,2	Dof-type zinc finger DNA-bindi...		Lus10028611 [exp]	126.3	0.8299
AT3G52440	DOF	AtDof3,5	Dof-type zinc finger DNA-bindi...		Lus10021266 [exp]	142.3	0.8239
AT3G60050			Pentatricopeptide repeat (PPR)...		Lus10014983 [exp]	144.3	0.8059

Compare expression of checked genes

Lus10035112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.