Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47430 400 / 1e-125 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT2G17820 135 / 8e-33 AHK1, ATHK1 histidine kinase 1 (.1) AT1G27320 103 / 2e-22 AHK3 histidine kinase 3 (.1) AT5G35750 97 / 1e-20 AHK2 histidine kinase 2 (.1) AT2G01830 95 / 9e-20 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT1G66340 94 / 1e-19 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G40940 75 / 7e-14 ERS1 ethylene response sensor 1 (.1) AT5G10720 73 / 3e-13 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031985 [exp] 1296 / 0 AT5G63890 752 / 0.0 HISTIDINE BIOSYNTHESIS 8, histidinol dehydrogenase (.1.2) Lus10031600 [exp] 740 / 0 AT2G47430 624 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10033746 [exp] 736 / 0 AT2G47430 615 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10029849 [exp] 254 / 5e-72 AT2G47430 489 / 2e-153 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10041891 [exp] 118 / 3e-27 AT2G17820 1561 / 0.0 histidine kinase 1 (.1) Lus10015773 [exp] 111 / 4e-25 AT1G27320 1395 / 0.0 histidine kinase 3 (.1) Lus10037032 [exp] 111 / 6e-25 AT1G27320 1094 / 0.0 histidine kinase 3 (.1) Lus10028438 [exp] 109 / 2e-24 AT2G17820 1553 / 0.0 histidine kinase 1 (.1) Lus10012325 [exp] 102 / 4e-22 AT5G35750 1278 / 0.0 histidine kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G121500 [exp] 490 / 1e-159 AT2G47430 753 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.008G191100 [exp] 489 / 4e-159 AT2G47430 746 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.013G009700 [exp] 387 / 5e-121 AT2G47430 572 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.007G056400 [exp] 118 / 4e-27 AT2G17820 1475 / 0.0 histidine kinase 1 (.1) Potri.005G111700 [exp] 115 / 2e-26 AT2G17820 1435 / 0.0 histidine kinase 1 (.1) Potri.001G057400 [exp] 115 / 3e-26 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.003G171000 [exp] 113 / 1e-25 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.014G164700 [exp] 97 / 2e-20 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.008G137900 [exp] 85 / 9e-17 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.010G102900 [exp] 83 / 5e-16 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain
Representative CDS sequence Show only first row Show all	>Lus10035113 pacid=23162537 polypeptide=Lus10035113 locus=Lus10035113.g ID=Lus10035113.BGIv1.0 annot-version=v1.0 ATGGAGACCAGTACCAAAAGTTTACATTCTTGTTTGACATCTCAGGTTGAACAAACAGCTATGGTGGCTAATCAGTTCAACTTGTCTGCAATGAATTTGG CCAGCCTGATGCATAATTCACTTAATCCAACTGATTTAAACTCACAGGGTGAAATGCAGGCCAAGGTGGCTCCTTTGTTGTATCAGGAATTCATAACGAT CCCTTACATTTCACAAATAGGATACATCGGACTAGAAGAATCTTTCTTCTCGTACTACTATGAGGGTAACCAAATTTATAGAGAAATGACACTTTATAAG CAACCAATTGATTCAGACACAGGACAGCTCAATGAAAATGCAACGAAATCCAGCGTCCCAATGAGATCAATTAGGCATTGGGTTCGAGAAACTTTTAGTA GCAACAACAAACAACACACCTTAGTGAGCAAACGATGGAAAGTAAATGCTCAAGAACTCATGTTCATCACTTTAGCTGGTGTGCATGAGCAAGGAGCAGT ATTGCTGGGAATTTCAGCTGAAACAGTCAGGCGTTTCTTCACTAGCATTGACCTCCTAGGAGGGAGATTGCACATAGCCACCAGAGATGGTAATCAAGTG GTTTTAGATGGTATTCCAGAAAGTAAGATCTCGGAAACTGATAGAGCTTCAGTTTCCATTGTTACTGCTGCCAGTGGGAATGTTACATGCTTTTTCGGCA ATGGTACTGCTGTTGTCAATATTGAACAACAAGAATACAAAGTATTTTGTTCATCAATTGAACTTGTTGGAGTGGAAATGTTCTATGCATTGGCATTTCC AAATGATGAGACGGAGGGAAGTGGTGCTATTCATAGGAGCAGAAGGTTAGCTTTCATTCTGCTAATGGTAATGATCGGTGTGCTTGTGATCTCCGTATTT GGATTCTTGCTGCTCACTGCAAAGGCTGCAAAAAGGGTGATACAACTGCGGGGAGCATTGATAAAACAAATGGAAGCCACTCAACAAGCTGAAAGGAAGT CTTTGAAGAAGAGTCTAGGCTTTGCCAGTGCCACCCACGAGATTCGTAATTTGTTGACACCCATTTCTGGCTTCATAGAGGATTGTGTTATGGACTGCCC CTCAGATTCCGCGAGAGCAACAAATCTGAAAGCCATTCATGAGTCCACTAAGGACTTAATCAGTTTCTTGAGTGCTATGCTAGACACAAGCAAGCTCGAA GAAGGAAAGATGCAGTTGGAAGAACAAGAATTCAATGTAGCTGGTGTTCTTGAGGACGTGGTTGATTTGTGTCATCCAATGGCCATGAAGAAAGACGTCG ACTTGATTTTAGATTTATCACATGTCTCCATTCTCAAGTTTAGTCACGTGATAGGTGATAGGGGAAAGCTGAAACAGGTTTTGTGGAACTTAGTGAGCAA TGCTGTGAAGTACACAGATGAAGGGCAAATCGTTGTTCGAGCCCGGGCTCAACAACCCGATTTGGAGAGCGTGATTATAGAATCCTACCACGATGGTTGC TCTAGATGGGTGTCGAAATTGGTCAAGTGGAACAATGATGGAGAAGAAGACCAAGTTGAGGAAATTCTAAGTGCTATGGAGCAAAATCCGAGCCTGAAGG AAAATTCTGAAGGGCAAGTTGGCACTGGTTTGGGACTTGGCATTGTTCAATCTTTGGTACGCCTAATGGGAGGAGAAATAGAGATAGTTGATAAGGAGAA TGATGAGAAGGGAACTTGCTTCAGATTCAATTGCCTTCTCACTGTGTCTGATACTAATCATAACAACATAAGAAATGACTTTGATCAGTTGGGCAATGAG ATCACTGAAGATTGTAACAATAGAAGCTTCAGCTATCCTGGACTGTGTGTTCCTAGTCCAAGGAGGGTTGGATCCCATGTCGTGCTCTTGATCAAGAACG AAGCACGAAGAAGAGCTTCACAGAAGTTTATGGAGAATTTGGGTATAAAGGTGACTGTAGTGGAACAATGGGAACACCTCCAATATGTGCTCCCGAAAAT GAAGTCAAATCTGAATCCTTTATCCTTTGAGTTCTTTAGGAAAATCTGA
AA sequence Show only first row Show all	>Lus10035113 pacid=23162537 polypeptide=Lus10035113 locus=Lus10035113.g ID=Lus10035113.BGIv1.0 annot-version=v1.0 METSTKSLHSCLTSQVEQTAMVANQFNLSAMNLASLMHNSLNPTDLNSQGEMQAKVAPLLYQEFITIPYISQIGYIGLEESFFSYYYEGNQIYREMTLYK QPIDSDTGQLNENATKSSVPMRSIRHWVRETFSSNNKQHTLVSKRWKVNAQELMFITLAGVHEQGAVLLGISAETVRRFFTSIDLLGGRLHIATRDGNQV VLDGIPESKISETDRASVSIVTAASGNVTCFFGNGTAVVNIEQQEYKVFCSSIELVGVEMFYALAFPNDETEGSGAIHRSRRLAFILLMVMIGVLVISVF GFLLLTAKAAKRVIQLRGALIKQMEATQQAERKSLKKSLGFASATHEIRNLLTPISGFIEDCVMDCPSDSARATNLKAIHESTKDLISFLSAMLDTSKLE EGKMQLEEQEFNVAGVLEDVVDLCHPMAMKKDVDLILDLSHVSILKFSHVIGDRGKLKQVLWNLVSNAVKYTDEGQIVVRARAQQPDLESVIIESYHDGC SRWVSKLVKWNNDGEEDQVEEILSAMEQNPSLKENSEGQVGTGLGLGIVQSLVRLMGGEIEIVDKENDEKGTCFRFNCLLTVSDTNHNNIRNDFDQLGNE ITEDCNNRSFSYPGLCVPSPRRVGSHVVLLIKNEARRRASQKFMENLGIKVTVVEQWEHLQYVLPKMKSNLNPLSFEFFRKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47430		CKI1	CYTOKININ-INDEPENDENT 1, Signa...		Lus10035113 [exp]	0	1
					Lus10019410 [exp]	7.3	0.9156
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10033738 [exp]	14.2	0.9064
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Lus10037726 [exp]	17.7	0.9022
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	20.3	0.9012
AT1G68470			Exostosin family protein (.1)		Lus10005567 [exp]	20.7	0.8992
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	24.1	0.8991
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021435 [exp]	27.7	0.8985
AT3G59510			Leucine-rich repeat (LRR) fami...		Lus10027040 [exp]	29.4	0.7961
AT1G57790			F-box family protein (.1)		Lus10004476 [exp]	30.0	0.8925
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10016284 [exp]	30.1	0.8950

Compare expression of checked genes

Lus10035113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.