Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47430 127 / 1e-32 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT2G17820 110 / 7e-27 AHK1, ATHK1 histidine kinase 1 (.1) AT2G01830 73 / 5e-14 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT1G27320 63 / 7e-11 AHK3 histidine kinase 3 (.1) AT5G26594 59 / 8e-11 ARR24 response regulator 24 (.1) AT5G35750 62 / 2e-10 AHK2 histidine kinase 2 (.1) AT3G04580 60 / 6e-10 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT3G04280 49 / 5e-07 ARR22 response regulator 22 (.1.2.3) AT5G10720 49 / 4e-06 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT1G10470 45 / 3e-05 IBC7, ATRR1, ARR4, MEE7 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031985 [exp] 526 / 2e-175 AT5G63890 752 / 0.0 HISTIDINE BIOSYNTHESIS 8, histidinol dehydrogenase (.1.2) Lus10033746 [exp] 352 / 2e-113 AT2G47430 615 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10031600 [exp] 352 / 3e-113 AT2G47430 624 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10029849 [exp] 125 / 7e-32 AT2G47430 489 / 2e-153 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10028438 [exp] 97 / 4e-22 AT2G17820 1553 / 0.0 histidine kinase 1 (.1) Lus10041891 [exp] 95 / 2e-21 AT2G17820 1561 / 0.0 histidine kinase 1 (.1) Lus10003686 [exp] 78 / 8e-16 AT2G01830 1330 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10028992 [exp] 78 / 8e-16 AT2G01830 1337 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10013250 [exp] 78 / 9e-16 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G191100 [exp] 192 / 6e-55 AT2G47430 746 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.014G121500 [exp] 179 / 2e-50 AT2G47430 753 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.013G009700 [exp] 141 / 2e-37 AT2G47430 572 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.005G111700 [exp] 114 / 4e-28 AT2G17820 1435 / 0.0 histidine kinase 1 (.1) Potri.007G056400 [exp] 107 / 8e-26 AT2G17820 1475 / 0.0 histidine kinase 1 (.1) Potri.008G137900 [exp] 77 / 1e-15 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.003G171000 [exp] 72 / 1e-13 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.010G102900 [exp] 72 / 1e-13 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.014G164700 [exp] 69 / 6e-13 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.009G108000 [exp] 63 / 3e-12 AT5G26594 163 / 5e-53 response regulator 24 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Lus10035114 pacid=23162419 polypeptide=Lus10035114 locus=Lus10035114.g ID=Lus10035114.BGIv1.0 annot-version=v1.0 ATGGAAGGCAACGATGAGCAAAAACATTCCTTGAGGAACAAGACTCTCCGAACTGGATCAGGATTTCTACTACTGGTGGTTGATGCTAGTGCCGGACCGT TTGAGGAACTGCGTAAAGTTTTGATGGACTTCAAAACATGCCTTAACTTCTCTAGCCTCAAGGTTGTGTGGATCGATAAACCGATATCGAGAAGAGTGGA CGGTGACCTCATTGATCCCTGCGATGAAATAATGCTGAAACCGTTTCATGGTGCTGGTTTAATTGAAGTAATCAAACTCCTTCCAGAATATGAAGTAACG ACACCTTCCAGGAAGAAAATCAAACAATCGTGTGCTTCTTCTTCTTCTTCTTCTTCGTGTGCTAGGCATCACATTGTCAGAGCTAAATCAAGTCCCCCAT TTATGGGAGACTTGGAGATCAAGAAAGAAGAAGAACAAGAACATGATGTGGTGAAATCAAGCATTGAAAACAAGCCATTGAATGGAGTAACATTCTTGGT CGTGGATGACAGTAAACCTGTTAGGGTTGTATCGACATTCATCCTTTCGAAGCTAGGAGCCAAGTCCGAGCAGTGTGAAGACGGATTGCAAGCTCTTGAA CGTTTTCGAGTTTCCTTCGAAGAGCAAGTTAGGAACGGAGTTTCTCCTTCGGTCCCTCCTTATGACTTCATCCTCATGGACTGCCAGATGCCGAAGATGG ATGGGTATGAAGCGACAATAGCGATAAGGGAAGCGGAGAAACGATATGGCATTCACACCCCGATAATAGGTCTAACAGAAAATACATCAAAGGAAGAACT GGACAGGGCGGTTGAAGCTGGAATGGATGTTCACCTCACCAAGCCCTTTCAGAGAGACGACATTTTGGAAACAGTTAGAAGGATTCGTGGCGGGGTTTGA
AA sequence Show only first row Show all	>Lus10035114 pacid=23162419 polypeptide=Lus10035114 locus=Lus10035114.g ID=Lus10035114.BGIv1.0 annot-version=v1.0 MEGNDEQKHSLRNKTLRTGSGFLLLVVDASAGPFEELRKVLMDFKTCLNFSSLKVVWIDKPISRRVDGDLIDPCDEIMLKPFHGAGLIEVIKLLPEYEVT TPSRKKIKQSCASSSSSSSCARHHIVRAKSSPPFMGDLEIKKEEEQEHDVVKSSIENKPLNGVTFLVVDDSKPVRVVSTFILSKLGAKSEQCEDGLQALE RFRVSFEEQVRNGVSPSVPPYDFILMDCQMPKMDGYEATIAIREAEKRYGIHTPIIGLTENTSKEELDRAVEAGMDVHLTKPFQRDDILETVRRIRGGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47430		CKI1	CYTOKININ-INDEPENDENT 1, Signa...		Lus10035114 [exp]	0	1
AT1G70460		AtPERK13, RHS10	proline-rich extensin-like rec...		Lus10013013 [exp]	4.1	0.7460
AT4G27570			UDP-Glycosyltransferase superf...		Lus10013367 [exp]	7.4	0.7743
AT5G66500			Tetratricopeptide repeat (TPR)...		Lus10028323 [exp]	7.5	0.5952
AT5G15110			Pectate lyase family protein (...		Lus10030791 [exp]	11.0	0.7680
AT5G56990			unknown protein		Lus10029528 [exp]	13.5	0.7665
					Lus10003825 [exp]	15.6	0.7665
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10014062 [exp]	17.5	0.7665
					Lus10038051 [exp]	19.1	0.7665
AT5G01660			unknown protein		Lus10040599 [exp]	20.7	0.7665
AT2G41970			Protein kinase superfamily pro...		Lus10017242 [exp]	21.2	0.7636

Compare expression of checked genes

Lus10035114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.