Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13960 682 / 0 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT2G22740 292 / 1e-87 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT2G35160 291 / 3e-87 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT5G04940 268 / 6e-80 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT1G73100 259 / 1e-76 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT4G13460 231 / 2e-66 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT2G33290 226 / 2e-64 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT1G17770 201 / 3e-55 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1) AT2G24740 180 / 1e-47 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1) AT2G23740 114 / 6e-26 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031984 [exp] 1215 / 0 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10041515 [exp] 887 / 0 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10001798 [exp] 428 / 2e-141 AT5G13960 446 / 8e-150 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10002571 [exp] 401 / 2e-131 AT5G13960 444 / 1e-149 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10040150 [exp] 298 / 8e-90 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10001011 [exp] 282 / 2e-82 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10011011 [exp] 278 / 6e-81 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10008681 [exp] 271 / 1e-80 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10029470 [exp] 255 / 6e-75 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G237950 [exp] 769 / 0 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.014G143900 [exp] 767 / 0 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G162801 [exp] 546 / 0 AT5G13960 529 / 8e-180 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G083100 [exp] 312 / 2e-93 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.001G036800 [exp] 266 / 7e-79 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.003G188700 [exp] 256 / 3e-75 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.016G025300 [exp] 252 / 1e-73 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.006G027600 [exp] 244 / 7e-71 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.010G064300 [exp] 241 / 2e-69 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.008G173100 [exp] 236 / 7e-68 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05033 [flax] [poplar] Pre-SET Pre-SET motif PF00856 [flax] [poplar] SET SET domain CL0178 [flax] [poplar] PUA PF02182 [flax] [poplar] SAD_SRA SAD/SRA domain
Representative CDS sequence Show only first row Show all	>Lus10035115 pacid=23162399 polypeptide=Lus10035115 locus=Lus10035115.g ID=Lus10035115.BGIv1.0 annot-version=v1.0 ATGGTAGCTCCTTCCTTGCAATGCGTCACCGACGACGTCGACGTTCCTGCTCACCCTTCCCTCGACTCTCCTCCTCTCAAATCAACTCCCCAGACACTCC CCGTAGACCACTCCCCTCCCGAACGGCGATCCAGTGCCCGTATTCAAGCCCAACAGCGTATCCAGAAGGAGATTCTCGAACGGAAACGTGTTCGGCTTCC GGATGGTGCAACTGAACCAGATTGCACCTTGAAACCTCCTCCCGCCAAGACAACTCAGGTCTACACTCGTCGAAGGACTCGTAATGGAGCTGCTCATGAG GCAGAGCAGCATGTGCAGGAACACAAGAAGAAGAAGCAGGAGAAGAAGGAAGAGGTGGTGGACCAGGAGATTGTTTCTAGTGACGGTGTACTAACCGGAG CATCTGGTAAGAAGAGTGCTCATGCTCGAGTCACTGAGACCTTGAGAACTTTCAACAAGTACTATCTACACTTTGTGCAGGAAGAGGAGAGTAGATGTGG GAGGAAGAAGAATGCCGGAAAGCAATCCCCTAAACCAAAGTCTAAAATCAAACCAAAGAAACCTGGGAAGCGGGAGAAAGTTGCTATACCTGACGCTAAA TCGAAGGCCATGCGTCCTGATCTTAAGGCAGCGACTAAAATGATGCAAACGAATGCTATATTGTATCCAAAGAGAAGAATTGGCAACCTTCCAGGCATTG AAGTCGGGCATCAATTTTATTCAAGAGCTGAGATGGTTGTTATTGGTATCCATAATCACTGGTTGTGTGGCATTGATTATATTGGTGCTTCCAACCAAAA GGAGTACCAGAACTACAAACTTCCACTTGCGGTATCCATTGTCTTGTCAGGAATGTACGAGGATGACCTGGATAATGCTGATGAAGTTTGTTACACGGGT CAAGGTGGGCATAATTTAAATGGCGATAAGCGCCAGAGTAAGGATCAAGTTATGAAGCGTGGAAATTTGGCACTCAAGAACTGCGTAGACCAGTCTGTGC CTGTAAGAGTGATTCGAGGCCATGTGTGCAAGAGCAGCTATGTTGGCAAGGTGGAAAAGTACTGGGCTGAGAAGGGTATATCTGGATTCACTGTATTCAA GTATGGGCTAAAGCGGCTCAAAGAGCAGCCAATATTGACCACTAATCAGTTATCTCAGGTCGCTAATGTTGTTTATACCTTGGCTGTTAAAGGAAACTCG GGACAGAGTCAGGTGCAATTCACAAATGGACGTGTTCCCCAGGCTATCTCTGAAATACGAGGGTTAGTATGTGATGATATCACTGGGGGACTTGAGGACG TTCCAATTCCAGCCACAAATTTGGTTGACGATCCACCTGTTCCTCCTACTGGCAAGTTGAAACTTAGTTTTACTTACTTGAAGACTAATAAAATTGCCAA AGGTGTAAAGCTCCCCAAAACCACTGCTGGATGTAACTGCAATGGGACCTGTGTGGATCCCAGAACTTGTGCTTGTGCAAAGCTTAATGGTACTGATTTC CCATATGTCCATCGAGATGGTGGCAGGCTAATCGAAGCAAAGGATGTTGTTTATGAGTGTGGTCCATCTTGTGGTTGTGGACCAAGCTGTGTTAACCGAG CCTCTCAGAGGGGACTGAGATATCGTCTTGAGGTTTTCTGTTCACCTAAGAAGGGTTGGGCTGTACGGTCATGGGATTTCATATACTCTGGGTCACCAGT TTGTGAGTATGTCGGAGTACTGAAGAGAACAGAAGATGTTGATAGTCTCACAGGGAATGATTATATTTTTGAGATTGATTGCTTGCAGACCATGAGAGGA TTGGGTGGGAGAGAGAGACGATCACGGGATGCATCACTTCCAGACAGCAAAAGCATTGCGTCCGAGGAGTCAAAGTCTGACAGCATCCCAGAATTCTGCA TCGATGCTGGTGCCAGTGGAAATGTTGCCCGATTTATTAACCACAGTTGCTCTCCTAATCTGTTCGTGCAGTGCGTTCTGAGCTCGCACCAAGACCTCCG GCTTGCCCGTGTAGTCTTATTTGCTGCTGACAACATTCCTCCTCTGCAGGAACTAACATATGACTACGGATACGCCCTTGATAGTGTAACGGGTCCTGAC GGAAAGATTAAACGTGTCCCTTGCTACTGTGGTGGATCCGATTGCAGAAAGCGACTGTACTAG
AA sequence Show only first row Show all	>Lus10035115 pacid=23162399 polypeptide=Lus10035115 locus=Lus10035115.g ID=Lus10035115.BGIv1.0 annot-version=v1.0 MVAPSLQCVTDDVDVPAHPSLDSPPLKSTPQTLPVDHSPPERRSSARIQAQQRIQKEILERKRVRLPDGATEPDCTLKPPPAKTTQVYTRRRTRNGAAHE AEQHVQEHKKKKQEKKEEVVDQEIVSSDGVLTGASGKKSAHARVTETLRTFNKYYLHFVQEEESRCGRKKNAGKQSPKPKSKIKPKKPGKREKVAIPDAK SKAMRPDLKAATKMMQTNAILYPKRRIGNLPGIEVGHQFYSRAEMVVIGIHNHWLCGIDYIGASNQKEYQNYKLPLAVSIVLSGMYEDDLDNADEVCYTG QGGHNLNGDKRQSKDQVMKRGNLALKNCVDQSVPVRVIRGHVCKSSYVGKVEKYWAEKGISGFTVFKYGLKRLKEQPILTTNQLSQVANVVYTLAVKGNS GQSQVQFTNGRVPQAISEIRGLVCDDITGGLEDVPIPATNLVDDPPVPPTGKLKLSFTYLKTNKIAKGVKLPKTTAGCNCNGTCVDPRTCACAKLNGTDF PYVHRDGGRLIEAKDVVYECGPSCGCGPSCVNRASQRGLRYRLEVFCSPKKGWAVRSWDFIYSGSPVCEYVGVLKRTEDVDSLTGNDYIFEIDCLQTMRG LGGRERRSRDASLPDSKSIASEESKSDSIPEFCIDAGASGNVARFINHSCSPNLFVQCVLSSHQDLRLARVVLFAADNIPPLQELTYDYGYALDSVTGPD GKIKRVPCYCGGSDCRKRLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10035115 [exp]	0	1
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Lus10037788 [exp]	5.7	0.8704
AT2G42520			P-loop containing nucleoside t...		Lus10015977 [exp]	8.2	0.8702
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10027170 [exp]	13.0	0.8169
AT4G16180			unknown protein		Lus10017062 [exp]	17.0	0.8665
AT1G02850		BGLU11	beta glucosidase 11 (.1.2.3.4....		Lus10007871 [exp]	17.1	0.7726
AT3G10070		TAF12, TAFII58	TATA-ASSOCIATED FACTOR II 58, ...		Lus10003250 [exp]	23.6	0.8477
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10022053 [exp]	26.1	0.8469
AT1G29370			Kinase-related protein of unkn...		Lus10007339 [exp]	26.9	0.8172
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Lus10010919 [exp]	29.5	0.8547
AT4G25730			FtsJ-like methyltransferase fa...		Lus10040439 [exp]	29.9	0.8554

Compare expression of checked genes

Lus10035115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.