Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13970 174 / 4e-50 unknown protein AT5G13310 68 / 2e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031983 [exp] 408 / 4e-138 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G238100 [exp] 240 / 6e-75 AT5G13970 204 / 2e-61 unknown protein Potri.014G143800 [exp] 225 / 4e-69 AT5G13970 217 / 3e-66 unknown protein Potri.003G163100 [exp] 145 / 6e-39 AT5G13310 129 / 1e-33 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035116 pacid=23162605 polypeptide=Lus10035116 locus=Lus10035116.g ID=Lus10035116.BGIv1.0 annot-version=v1.0 ATGGAAGATACCTTCAGATCTCGAGTTGACAAAGTCTTCGGTTCTCTTCCCGGAGCCGCCCCAACCGCGGCGGGCGCCCCCAGCAGCTCTCTCTGGTCCC TCACCGACGACGAAGTCGAGGCTGTCCGTTGGAGGAAGAGCGCCGATGATGAAGATGACGACGACGACGACATGGAATCACTGTCGGCTGGATTAATCGT AGGTGAAAAACCTAAAGCGACGCCCTCCACGGGTATCCTGGACCCGATTGAAAACGACCTCGATGACCTAGATGACGACGACGACGATGAGCAGAAGAAG AAGAAGTGCGGAGGATCTTCAGATGCTCCGCTCGATCCCAAGCCTGATGATTACAACGATGAGGAATGGGAGATTAAAAACTCCATCGGTCGCGACTGCA CTCTTGATTTTGAGGACGAGGAAGATCAATACGATAAAGTAGCCGTTGGCAGGGTAAAATCGGGCGATCGAATGTATATGAAGGATTTAACGAAGAATCA GTACGACATTGACACAGGCTCTTCCAGTTCACTGAAAAAAGGCTTTCTTAAGAAGGATCCACGGGCGAATCATATGGCGGCCAAACTCAGGCTCAAGGAG GATGACGAAGCTGCAGCTAACAATATTGACTCTTTGAAGGTTTCCGGCAATGGATCCCAACAGGATAATAGCAGCCTCAAATCCATTCTGAAGAGGAAGG ATGATCAATTGGAAGCTCAGAAGAAGAAGAAGCAGCTAGACGATTCCAAGTCTGGCAAGCGTGTTCGATTTGATCCAGAATGCATTGATGGTTCGGAGGA TCTGTCAGATACAGAGATGGAAGGGGACGATGATTCTCTCGTCTACCCCATGCCTGAGAGTTACCCGTCTGGAATCCCAGACTACATGCGGAATCCTACC AAGTATACTAAATACACCTTCCCCTCAACCGATGTAGACGAAGGTTCCAACCGGCAAGCCTATATGGACTTTCTGAAGCTAATAAAAAAATCGGAACCAG AAGAAAACGACCTCGGTGGTGAACTTCCGAAGTCGCTCCAGTTTGTGCCGAGAAAGAAGGACAATGGCAACGACGATTCGAAGAACAAGCAGGAGAATGC TAGTCACAGGAAGGGCGTCATAGCTGCCGCTGCTGATGCTGATACTGATTTGGAAGCTGGCGAAACTTGCGATATGGATGAGGATGTACCAGAAACAGAA GCTGGTACTCAAAATGGGAAACCAGGCCGTCAGTATCGAACGAAGGCTAAAGCTTGA
AA sequence Show only first row Show all	>Lus10035116 pacid=23162605 polypeptide=Lus10035116 locus=Lus10035116.g ID=Lus10035116.BGIv1.0 annot-version=v1.0 MEDTFRSRVDKVFGSLPGAAPTAAGAPSSSLWSLTDDEVEAVRWRKSADDEDDDDDDMESLSAGLIVGEKPKATPSTGILDPIENDLDDLDDDDDDEQKK KKCGGSSDAPLDPKPDDYNDEEWEIKNSIGRDCTLDFEDEEDQYDKVAVGRVKSGDRMYMKDLTKNQYDIDTGSSSSLKKGFLKKDPRANHMAAKLRLKE DDEAAANNIDSLKVSGNGSQQDNSSLKSILKRKDDQLEAQKKKKQLDDSKSGKRVRFDPECIDGSEDLSDTEMEGDDDSLVYPMPESYPSGIPDYMRNPT KYTKYTFPSTDVDEGSNRQAYMDFLKLIKKSEPEENDLGGELPKSLQFVPRKKDNGNDDSKNKQENASHRKGVIAAAADADTDLEAGETCDMDEDVPETE AGTQNGKPGRQYRTKAKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13970			unknown protein		Lus10035116 [exp]	0	1
AT3G18310			unknown protein		Lus10023992 [exp]	2.4	0.8621
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10018737 [exp]	3.2	0.8635
AT1G50640	AP2_ERF	ATERF3	ethylene responsive element bi...		Lus10031526 [exp]	5.5	0.8311
AT2G29900		PS2	Presenilin-2 (.1)		Lus10031966 [exp]	5.7	0.8524
AT4G02720			unknown protein		Lus10022052 [exp]	5.7	0.8561
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10000312 [exp]	7.5	0.7740
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10011065 [exp]	8.5	0.8090
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10022665 [exp]	8.9	0.8327
AT1G48040			Protein phosphatase 2C family ...		Lus10017106 [exp]	10.0	0.7985
AT4G02720			unknown protein		Lus10042601 [exp]	11.7	0.8260

Compare expression of checked genes

Lus10035116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.