Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26710 277 / 8e-94 CCB1 cofactor assembly of complex C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031981 [exp] 383 / 1e-135 AT3G26710 299 / 1e-102 cofactor assembly of complex C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G463200 [exp] 306 / 3e-105 AT3G26710 291 / 6e-99 cofactor assembly of complex C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12046 [flax] [poplar] CCB1 Cofactor assembly of complex C subunit B
Representative CDS sequence Show only first row Show all	>Lus10035119 pacid=23162390 polypeptide=Lus10035119 locus=Lus10035119.g ID=Lus10035119.BGIv1.0 annot-version=v1.0 ATGGCTGCAGCTGCAACTGCAACCGCCGGTACAAACCTGAACTTGAACCTTCCACCACTCTCTCTCTACCATTCTTCTTCCTCGCCATGGAAACTTCATC ACCACCGCCCATTTAGCAGCAGCACCACCAGAAGACTGCAGCTCCGGTCGTCTCTCCAAACTCTACCCCTCATCGTCTCGTCTCTACCGCCGGACTCTTT TTCCGTCTACTCAGTCGCCGAGAGCAGCACCTACTCTTTGGCTAGCTACTACACTTCCCTCGGCCTATTCGTCATCTCCCTCCCCGGTCTATGGTCGCTT ATCAAGCGCTCTGTTAAATCCAAGGTTGTGCAGAAGACTTATACAGGCCAGAAACCACCAAACCAAGTTGCTGGAGAGATCCAGTCGTTCTTCACTCGTA ACAATTTTGTGGTGGCCGATAGAGGAGAGACCATCACGTTTGAAGGAATGATGGTTCCAAATCGAGGCCAAGCAGCATTGCTTACTTTCTGCACTTGCAT CAGCCTTGCTAGCGTTGCCCTCGTCCTCACCATTACTTATCCGGACGTAGGCAGCAACTGGTTCTGGCTTACCATCTTCAGCCCTTTGGCGGGAGCATAC TACTGGAGTAAAGCATCTAGGAAGGAGCAAATAAAGGTAAAGATGATGGTCGGAGACGACGGGGCCTTGCAAGAGATCATCGTCCAAGGAGATGATCAGC AAGTTGAGCAAATGAGGAAGGAGCTGGAGTTGAATGAGAAAGGCATGATCTATGTGAAGGGAATTTTCGAGAGATAA
AA sequence Show only first row Show all	>Lus10035119 pacid=23162390 polypeptide=Lus10035119 locus=Lus10035119.g ID=Lus10035119.BGIv1.0 annot-version=v1.0 MAAAATATAGTNLNLNLPPLSLYHSSSSPWKLHHHRPFSSSTTRRLQLRSSLQTLPLIVSSLPPDSFSVYSVAESSTYSLASYYTSLGLFVISLPGLWSL IKRSVKSKVVQKTYTGQKPPNQVAGEIQSFFTRNNFVVADRGETITFEGMMVPNRGQAALLTFCTCISLASVALVLTITYPDVGSNWFWLTIFSPLAGAY YWSKASRKEQIKVKMMVGDDGALQEIIVQGDDQQVEQMRKELELNEKGMIYVKGIFER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26710		CCB1	cofactor assembly of complex C...		Lus10035119 [exp]	0	1
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10035346 [exp]	1.4	0.9651
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10029979 [exp]	2.4	0.9559
AT3G19800			Protein of unknown function (D...		Lus10040969 [exp]	3.0	0.9506
AT2G23820			Metal-dependent phosphohydrola...		Lus10015497 [exp]	5.0	0.8993
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10004576 [exp]	5.7	0.9383
AT1G49380			cytochrome c biogenesis protei...		Lus10011311 [exp]	7.1	0.9247
AT2G27680			NAD(P)-linked oxidoreductase s...		Lus10020578 [exp]	8.0	0.9292
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Lus10030615 [exp]	8.1	0.9240
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Lus10027115 [exp]	9.5	0.9369
AT5G19540			unknown protein		Lus10034912 [exp]	9.6	0.9019

Compare expression of checked genes

Lus10035119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.