Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035120 pacid=23162577 polypeptide=Lus10035120 locus=Lus10035120.g ID=Lus10035120.BGIv1.0 annot-version=v1.0 ATGGTGAAGAACGGAACAGCAGCAATGAGGAGCAAGTTGTCTATGAGGCCATTCCTCTCATTTGTCACTGCTGTTGGCATGCCGGGCATCATGACTGCCT CTTGTTCTCGATTACCTGTGGCCGATGAAACCATGATCCCTACCAACCAGATTGTCGTATCTGACTTCCCCGGGGAGGAGGCAGGTCGTGGAGATTGGAT GGTTTCTAAGCCACCCCCCAAGAAGAGGCGTGGTACTCGTAAAATAGCTGGAGTTGACGGGCCCCATTTACATGCAACTATGGACCCCGCTATTGGGGAG ACCAAAGGTGTTGACGTTGTGGCTTTCTAG
AA sequence Show only first row Show all	>Lus10035120 pacid=23162577 polypeptide=Lus10035120 locus=Lus10035120.g ID=Lus10035120.BGIv1.0 annot-version=v1.0 MVKNGTAAMRSKLSMRPFLSFVTAVGMPGIMTASCSRLPVADETMIPTNQIVVSDFPGEEAGRGDWMVSKPPPKKRRGTRKIAGVDGPHLHATMDPAIGE TKGVDVVAF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10035120 [exp]	0	1
AT5G55590		QRT1	QUARTET 1, Pectin lyase-like s...		Lus10016605 [exp]	1.0	0.9956
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10033355 [exp]	2.4	0.9658
AT3G05610			Plant invertase/pectin methyle...		Lus10006940 [exp]	2.8	0.8898
AT1G73120			unknown protein		Lus10022961 [exp]	3.5	0.9556
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10034573 [exp]	3.6	0.8465
AT5G04885			Glycosyl hydrolase family prot...		Lus10013388 [exp]	4.9	0.9322
AT2G36110			Polynucleotidyl transferase, r...		Lus10043049 [exp]	5.3	0.8988
AT5G14230			unknown protein		Lus10022339 [exp]	6.0	0.8175
AT1G40087			Plant transposase (Ptta/En/Spm...		Lus10007402 [exp]	6.3	0.8819
AT4G01580	B3		AP2/B3-like transcriptional fa...		Lus10008460 [exp]	6.8	0.7401

Compare expression of checked genes

Lus10035120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.