Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13950 256 / 2e-72 unknown protein AT3G45830 62 / 2e-09 unknown protein AT1G02290 56 / 6e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031980 [exp] 587 / 0 AT5G13950 438 / 2e-138 unknown protein Lus10018907 [exp] 57 / 5e-08 AT1G02290 210 / 3e-62 unknown protein Lus10036145 [exp] 52 / 2e-06 AT3G45830 1034 / 0.0 unknown protein Lus10018121 [exp] 52 / 2e-06 AT3G45830 803 / 0.0 unknown protein Lus10028606 [exp] 50 / 5e-06 AT1G02290 206 / 7e-61 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G237800 [exp] 341 / 5e-104 AT5G13950 556 / 0.0 unknown protein Potri.014G144100 [exp] 333 / 9e-101 AT5G13950 406 / 4e-127 unknown protein Potri.002G184000 [exp] 53 / 6e-07 AT1G02290 231 / 2e-69 unknown protein Potri.009G026100 [exp] 52 / 2e-06 AT3G45830 1059 / 0.0 unknown protein Potri.014G109600 [exp] 51 / 2e-06 AT1G02290 229 / 3e-68 unknown protein Potri.001G233800 [exp] 51 / 3e-06 AT3G45830 1075 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035121 pacid=23162597 polypeptide=Lus10035121 locus=Lus10035121.g ID=Lus10035121.BGIv1.0 annot-version=v1.0 ATGGAGGTGCTCTCGCCTGAGGTCTGGCAGACTTGCTTGTCAGTGAAAGAGAGAATCTTTCTTATGAAGTTTCTACCTAAGGAGGTGGATGCAGATGAAG TTGTGGAAGATTTACTATCAGGGGAAACCTTTCATTTTGGAAATCCTTTTATCAGATGGAGCAGTTCACTTTGCTCGGGTAATCTTCACCCTGATGCCAT CCTTCGTCAGGAACGGGCTCTCAAGGCTGCTAAGAAAGCACACTATGGGGAGATCCAGAATTACCATAATGACATGATCAGATTTTTGCAGACTCTGAAA GCAACATGCGAGAGTAGCAGGGATCCAGAAAATGAGGTTTTTCAGACAACATGCAGGTTACGGAGGGATGCAGAGAGAAATACATTCTCGCTTGGATATG AATGTAGATTTCTAGATAATGAAGAAAAGGTAGCGACATCTGAGTCTTTCTCTTTAGTTGCGGAGGATAAAGGATGCAGCAGTGACAACCAGAATTCTTC CGTGAAGGGTGCACATCATGTTAAAAGAAATGAGAAAAGCTCATCAAAGGGGAATGACAAAAAACCATCGGCTGCATTGGATGGTGAAGAATCAGGGAAA GTAGATAAGGTGCAGAAGCACAATATTCACCAGACCGATGGTTCCAAATACATGTCGTACCTAAAGATAAGTAAGAAGCAGCACCAACTTGTGAAGAACA TGAAACAATCTGGTAAAAGCATTCAGTCCAAGTCTCTTAACCGTGTACTGGGCGACCTTGCTACGTTGCATGTACAACCATATGCTCAGTTTGTAAAAGA GGAAGAGAACAAGTTGCAGGAGCATTGGCTGCAGCTGGCAAACAAAGATCTTCCTGCTGCATATGCGGACTGGAGAGAAAGACAGTCCCAAAGACAAGAA ATTATTAGGTCTTTAGTGGAGGACTTGAAACTACTAGGTCAAGAAAATGTTGAGGATAACTTAGATGAAAAGGTGGAAGATTACAAAGATGAAGTGGAAG AACAAGAACAAGAACGAGAGGAGGAATATGATGATCAAGAACAAGAACGTGAAGAGGAATATGATGATCAAAATGAAGACAGAGATGAGGGTAAAGAAGA GATGGAATACCAGCAGCCAAGTGTTTCCTCACCTCAATGGGAAGCAGACTTACGTGACCAATTTGTAGAAGATGAGGAGAAAGAGAACCTTAATGATTAT AATAGTGGAAGAGATAGAGAAGAAGAGTCAGATGTGGAGTTGGATAGTCAGGATAAGGAGACAGATGATGATGAGGTGATGGTTGGAAATCAAAATGATA GTGATGCTATTGTTCCAGATCAGAATGAGCAGATTGATGCTTTTCAGGATCAGAGCGATGAAGAAGCTAGGAGCCAAGATTCCAATCCTGAAGATGATGA AGAAACTGGTTCACGCTCCCTTCAGTATCAGTCACCACAACTTATCTCTTCATTGGGTGCTCAAGAGTCTCCACAAGTACTTTGTTTGTTAGGTAGTGAT ACTGTTGTTGATACAGTACATAGGAATACCTCCCCAGGTCACTCAAGGAGTGCAATCATGGCAGAGACCGTGGTTGATCCCGGAGCTCCTATATCCTCCA GCGTGGATGTCTGGTCAGCAGTCAGCATGCCACAGTCCTACTATGACTCTACTTCAAACTATACCCATGATCAGGATTACATATCTACACAGGCTTTAAT GGCCCAAAATCAAGCCAATGACAAGCAGCACATCCAAATGGTTGATTTGGGATCTCATGTGCATGGAGATGCCAGGAGGGATTTGTTACATAGGCAGTCT GATGGGGGCTCGTTCAGCTCTTGCCCGAACCCTGACCGAAGTGGTCTACTTCAGTCACTGTTTAAAGGACAGGAGACTTCACCCTACACCCAGGAACAAA AGCAGGAAGCTTTAGATTTCCAGTCCCAGAGTAATGTTTTAATTGAAGCTGGGCATTTTAATGGGCACATTCATCCTTCTCTCCCACTAGGGCAGGGTCA AAAGAGACACACAGAAGATTTCATGCAACAGAACTTGGCTCATGATGTTTATTCCTCTATTGGTGGGTATATAATCCCGAGGCAGGAACATGTCCAGCCG CATGTCAATCTTCAAGACTGGAATGCAAATCCGGCTTCTGCTCGGCCACCAATGGCATTGCGGCCAAGTAGTAACCCTTTGGATTCGTTAGTAGCTTCCA GTGGGCATCAGATGATGCTACCAAGGAACTACAATATGGTGGGTGGTGGTGGGATGGCTGGAGGTAGTACGCTACCGCTTGTGGGTATGCATACGCACGA TTACTTTACCGGGCGCGAGGGAAGTGGTGGAGGAGGCTTAGTGATGCCGGAAGAAGCAGGATGGATGAACCTTGGAGGACACAGTAATGGTATTAGTAAT AGTGGTAACAACAGTAGTAGTAATTCTGGGTATCATGACCCGATGGGGAAGCCGCCATACTTGAGGTCATGGCATCAGCAATGA
AA sequence Show only first row Show all	>Lus10035121 pacid=23162597 polypeptide=Lus10035121 locus=Lus10035121.g ID=Lus10035121.BGIv1.0 annot-version=v1.0 MEVLSPEVWQTCLSVKERIFLMKFLPKEVDADEVVEDLLSGETFHFGNPFIRWSSSLCSGNLHPDAILRQERALKAAKKAHYGEIQNYHNDMIRFLQTLK ATCESSRDPENEVFQTTCRLRRDAERNTFSLGYECRFLDNEEKVATSESFSLVAEDKGCSSDNQNSSVKGAHHVKRNEKSSSKGNDKKPSAALDGEESGK VDKVQKHNIHQTDGSKYMSYLKISKKQHQLVKNMKQSGKSIQSKSLNRVLGDLATLHVQPYAQFVKEEENKLQEHWLQLANKDLPAAYADWRERQSQRQE IIRSLVEDLKLLGQENVEDNLDEKVEDYKDEVEEQEQEREEEYDDQEQEREEEYDDQNEDRDEGKEEMEYQQPSVSSPQWEADLRDQFVEDEEKENLNDY NSGRDREEESDVELDSQDKETDDDEVMVGNQNDSDAIVPDQNEQIDAFQDQSDEEARSQDSNPEDDEETGSRSLQYQSPQLISSLGAQESPQVLCLLGSD TVVDTVHRNTSPGHSRSAIMAETVVDPGAPISSSVDVWSAVSMPQSYYDSTSNYTHDQDYISTQALMAQNQANDKQHIQMVDLGSHVHGDARRDLLHRQS DGGSFSSCPNPDRSGLLQSLFKGQETSPYTQEQKQEALDFQSQSNVLIEAGHFNGHIHPSLPLGQGQKRHTEDFMQQNLAHDVYSSIGGYIIPRQEHVQP HVNLQDWNANPASARPPMALRPSSNPLDSLVASSGHQMMLPRNYNMVGGGGMAGGSTLPLVGMHTHDYFTGREGSGGGGLVMPEEAGWMNLGGHSNGISN SGNNSSSNSGYHDPMGKPPYLRSWHQQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13950			unknown protein		Lus10035121 [exp]	0	1
AT5G51690		ACS12	1-amino-cyclopropane-1-carboxy...		Lus10038899 [exp]	8.7	0.8124
AT5G48040			Ubiquitin carboxyl-terminal hy...		Lus10012201 [exp]	16.7	0.8032
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10034126 [exp]	20.2	0.7750
AT3G45830			unknown protein		Lus10036145 [exp]	21.7	0.7955
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10023240 [exp]	39.7	0.7481
AT1G22960			Pentatricopeptide repeat (PPR)...		Lus10000364 [exp]	48.0	0.7354
AT1G74580			Pentatricopeptide repeat (PPR)...		Lus10038974 [exp]	57.4	0.7385
AT1G29370			Kinase-related protein of unkn...		Lus10007338 [exp]	61.7	0.7403
AT3G22380		TIC	time for coffee (.1.2)		Lus10010535 [exp]	64.8	0.7423
AT5G04610			S-adenosyl-L-methionine-depend...		Lus10023784 [exp]	70.4	0.7322

Compare expression of checked genes

Lus10035121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.