Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55930 288 / 2e-93 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1) AT4G26590 276 / 5e-89 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT4G10770 226 / 4e-70 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT4G27730 223 / 5e-69 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT5G53520 220 / 7e-68 ATOPT8 oligopeptide transporter 8 (.1) AT1G09930 213 / 3e-65 ATOPT2 oligopeptide transporter 2 (.1) AT5G64410 207 / 5e-63 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT5G53510 202 / 3e-61 ATOPT9 oligopeptide transporter 9 (.1) AT4G16370 190 / 1e-56 ATOPT3 oligopeptide transporter (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031978 [exp] 355 / 1e-119 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016633 [exp] 323 / 6e-107 AT4G26590 1087 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022544 [exp] 323 / 7e-107 AT4G26590 1079 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016632 [exp] 310 / 3e-103 AT4G26590 981 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022543 [exp] 311 / 2e-100 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022541 [exp] 286 / 5e-93 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10042147 [exp] 273 / 8e-88 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10004237 [exp] 260 / 6e-87 AT5G55930 509 / 6e-177 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1) Lus10032585 [exp] 267 / 4e-85 AT4G26590 1020 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369700 [exp] 298 / 2e-97 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G370100 [exp] 292 / 4e-95 AT4G26590 1006 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.016G004800 [exp] 272 / 2e-87 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.006G003700 [exp] 258 / 2e-82 AT4G26590 863 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.012G019700 [exp] 233 / 8e-73 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.003G145500 [exp] 229 / 3e-71 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.012G019500 [exp] 228 / 5e-71 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.007G056900 [exp] 226 / 7e-70 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.009G079500 [exp] 211 / 2e-64 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.002G109300 [exp] 205 / 4e-62 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10035123 pacid=23162457 polypeptide=Lus10035123 locus=Lus10035123.g ID=Lus10035123.BGIv1.0 annot-version=v1.0 ATGAAGAAGAACTATGAACAAGTACCCAAATGGTGGTTCTTAGTTGTGTTGGCTATCTCCATTGGTCTTGCCTTTCTTGCACTTGAAGGATTCAATAAGC AGCTGCAACTTCCATGGTGGGGACTCATCTTAGCATGTTATATTGCCCTTACTTACACCTTACCAATTGGGATTATTCAGGCCACAACAAATCAGCAAAT AGGTATATACGTGATAACAGAGCTGATCATAGGATACATGTACCCAGGGAAGCCACTAGCAAACGTAGCATTCAAGACCTACGGCTACATCAGCATGTCA CAAGACTTGGGATTCCTCGCAGACTTCAAACTAGGGCACTGCATGAAAATCCCACCCAAGATCATGTTTGCAGTTCAGACAATCGGCACGCTCGTGTCCT CAACGGTGTACTTCGGCACAGCCTGGTGGCTTCTCTCTTCAATAAAGAACATATGCGACACGGACTCCCTTCCATGTACAGGGGACAATGTCTTCTACAA CGCCTTGATAATTTGGGGCGTCATCGGACCGCTCATGATGTTCACCAAAAGCGGGGTGTACCCGGACATGAACTAG
AA sequence Show only first row Show all	>Lus10035123 pacid=23162457 polypeptide=Lus10035123 locus=Lus10035123.g ID=Lus10035123.BGIv1.0 annot-version=v1.0 MKKNYEQVPKWWFLVVLAISIGLAFLALEGFNKQLQLPWWGLILACYIALTYTLPIGIIQATTNQQIGIYVITELIIGYMYPGKPLANVAFKTYGYISMS QDLGFLADFKLGHCMKIPPKIMFAVQTIGTLVSSTVYFGTAWWLLSSIKNICDTDSLPCTGDNVFYNALIIWGVIGPLMMFTKSGVYPDMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55930		ATOPT1	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10035123 [exp]	0	1
					Lus10025571 [exp]	3.2	0.8307
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Lus10019716 [exp]	7.4	0.8776
AT5G45180			Flavin-binding monooxygenase f...		Lus10023942 [exp]	15.6	0.7564
AT3G03000			EF hand calcium-binding protei...		Lus10004539 [exp]	16.2	0.8477
					Lus10009439 [exp]	19.0	0.8354
AT3G59510			Leucine-rich repeat (LRR) fami...		Lus10027040 [exp]	21.0	0.7901
AT2G43610			Chitinase family protein (.1)		Lus10001772 [exp]	23.5	0.8333
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10019320 [exp]	26.3	0.6934
AT1G02335		GL22	germin-like protein subfamily ...		Lus10020632 [exp]	29.9	0.8269
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10036616 [exp]	30.2	0.6083

Compare expression of checked genes

Lus10035123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.