Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55930 70 / 4e-16 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1) AT4G26590 68 / 2e-15 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT4G16370 63 / 1e-13 ATOPT3 oligopeptide transporter (.1) AT1G09930 59 / 3e-12 ATOPT2 oligopeptide transporter 2 (.1) AT4G27730 56 / 4e-11 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT5G64410 53 / 4e-10 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT4G10770 52 / 7e-10 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT5G53520 52 / 1e-09 ATOPT8 oligopeptide transporter 8 (.1) AT5G53510 45 / 2e-07 ATOPT9 oligopeptide transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031978 [exp] 115 / 7e-32 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016632 [exp] 89 / 1e-22 AT4G26590 981 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022541 [exp] 88 / 2e-22 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022312 [exp] 82 / 3e-22 AT4G26590 151 / 1e-43 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022543 [exp] 87 / 4e-22 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032585 [exp] 83 / 1e-20 AT4G26590 1020 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10014885 [exp] 82 / 2e-20 AT4G26590 961 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10043161 [exp] 82 / 3e-20 AT4G26590 951 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032586 [exp] 82 / 4e-20 AT4G26590 1004 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G004800 [exp] 89 / 5e-23 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.006G003700 [exp] 86 / 1e-21 AT4G26590 863 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G369700 [exp] 82 / 3e-20 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G370100 [exp] 79 / 3e-19 AT4G26590 1006 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.016G006500 [exp] 62 / 3e-13 AT4G16370 1305 / 0.0 oligopeptide transporter (.1) Potri.006G006000 [exp] 62 / 4e-13 AT4G16370 1284 / 0.0 oligopeptide transporter (.1) Potri.005G150400 [exp] 59 / 4e-12 AT5G64410 1106 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.002G109300 [exp] 58 / 7e-12 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1) Potri.003G145500 [exp] 55 / 6e-11 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.009G079500 [exp] 54 / 2e-10 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035124 pacid=23162381 polypeptide=Lus10035124 locus=Lus10035124.g ID=Lus10035124.BGIv1.0 annot-version=v1.0 ATGGATGCTGGAGTTGCATTCTTGGCTGTTTTGATTAACTTTGTTCTTCAGGATAAGAATATTTACGGTCCTAAATGGTGGGGGTTAGAAGGTGATGATC ATTGCCCGTTGGCTACTTGCCCTCCTGCCCCTGGAATGAATGTCACTGGTTGCCCTGTCTTCCATTGA
AA sequence Show only first row Show all	>Lus10035124 pacid=23162381 polypeptide=Lus10035124 locus=Lus10035124.g ID=Lus10035124.BGIv1.0 annot-version=v1.0 MDAGVAFLAVLINFVLQDKNIYGPKWWGLEGDDHCPLATCPPAPGMNVTGCPVFH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55930		ATOPT1	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10035124 [exp]	0	1
AT4G22410			Ubiquitin C-terminal hydrolase...		Lus10035548 [exp]	5.7	0.6807
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10028741 [exp]	10.0	0.6314
AT3G44150			unknown protein		Lus10021005 [exp]	14.8	0.6281
					Lus10033096 [exp]	26.8	0.5806
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10021338 [exp]	27.9	0.5806
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030286 [exp]	29.0	0.5806
AT1G27220			paired amphipathic helix repea...		Lus10000805 [exp]	30.0	0.5806
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10010229 [exp]	34.6	0.5728
AT1G31450			Eukaryotic aspartyl protease f...		Lus10002630 [exp]	37.6	0.5643
AT5G63920		TOP3A, AtTOP3al...	topoisomerase 3alpha (.1)		Lus10006779 [exp]	39.5	0.5627

Compare expression of checked genes

Lus10035124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.