Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19330 138 / 3e-39 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) AT3G19250 108 / 4e-28 Protein of unknown function (DUF677) (.1) AT3G49070 64 / 4e-12 Protein of unknown function (DUF677) (.1) AT1G20180 55 / 6e-09 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031977 [exp] 261 / 5e-87 AT3G19330 284 / 2e-93 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Lus10039258 [exp] 56 / 9e-10 AT3G49070 168 / 1e-50 Protein of unknown function (DUF677) (.1) Lus10005612 [exp] 54 / 1e-08 AT1G20180 268 / 1e-86 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10010144 [exp] 51 / 1e-07 AT1G20180 260 / 4e-83 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10017348 [exp] 50 / 3e-07 AT1G20180 255 / 4e-81 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10017286 [exp] 48 / 2e-06 AT1G20180 265 / 1e-85 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G240200 [exp] 128 / 2e-35 AT3G19330 311 / 9e-104 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Potri.002G067300 [exp] 67 / 5e-13 AT1G20180 130 / 2e-34 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.005G193000 [exp] 65 / 2e-12 AT1G20180 155 / 8e-44 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.015G147400 [exp] 64 / 3e-12 AT3G49070 253 / 1e-80 Protein of unknown function (DUF677) (.1) Potri.005G243800 [exp] 51 / 1e-07 AT1G20180 252 / 2e-80 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.002G018200 [exp] 48 / 2e-06 AT1G20180 288 / 2e-94 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF05055 [flax] [poplar] DUF677 Protein of unknown function (DUF677)
Representative CDS sequence Show only first row Show all	>Lus10035125 pacid=23162523 polypeptide=Lus10035125 locus=Lus10035125.g ID=Lus10035125.BGIv1.0 annot-version=v1.0 ATGCGCCGCTGCTTCACTCAGCTAAGACACCAGCTCGACCGCCGGCTCCACAAGTCCCGTTCAAGGATCCGTCTTGCTCGCCGGGCCACCATTGCTTCGG TGGTCTGTGTAATAGGCTCGGTGGTAGCAGTGGCTGCTTCAGCAGCCATGATAGCAACTCATTCTCTTGCTGCGATTGTAGCTTGCCCGCCATTGTGCAG TACTGCTGCTTACCCGGAGCCTGGAAGCAGCAATCGATTCACTAGGAAAGAGTTTGCACATGTGAAGCAGCTGGATGCAGCTGCTAGGGGTGCGTGTGTG CTAAACAATGACCTCGACACAATCGACCGGCTTGCAGCGAGGCTATATGCTGCTGTGGAGGACGACAGGTTCCTGATAAGGATTGGGTTGGAGAGAGGGA AGGAGGTGCACCCGACGATGGAGGTGCTGAAGCAACTGAAGAAGAACCAGTTGAATTTGGTGCACCAGCTGGGTGATCTCGAGGAACACCTCTGCCTCTG CTTCAACGCTGTGAATAGAGCGAGGTCACTGCTGCTTCAGGAGATACATGAGTATCATCAAACCCCGCAATCCTCTGACATATATAGGCTTAATTAA
AA sequence Show only first row Show all	>Lus10035125 pacid=23162523 polypeptide=Lus10035125 locus=Lus10035125.g ID=Lus10035125.BGIv1.0 annot-version=v1.0 MRRCFTQLRHQLDRRLHKSRSRIRLARRATIASVVCVIGSVVAVAASAAMIATHSLAAIVACPPLCSTAAYPEPGSSNRFTRKEFAHVKQLDAAARGACV LNNDLDTIDRLAARLYAAVEDDRFLIRIGLERGKEVHPTMEVLKQLKKNQLNLVHQLGDLEEHLCLCFNAVNRARSLLLQEIHEYHQTPQSSDIYRLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19330			Protein of unknown function (D...		Lus10035125 [exp]	0	1
AT2G27190		ATPAP12	ARABIDOPSIS THALIANA PURPLE AC...		Lus10006126 [exp]	5.9	0.7648
AT2G46640			unknown protein		Lus10030218 [exp]	16.6	0.8186
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10002000 [exp]	30.4	0.7551
AT2G41640			Glycosyltransferase family 61 ...		Lus10018048 [exp]	39.2	0.7512
AT1G05170			Galactosyltransferase family p...		Lus10015107 [exp]	43.1	0.7412
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10040265 [exp]	47.7	0.7612
AT3G11900		ANT1	aromatic and neutral transport...		Lus10021089 [exp]	66.4	0.6953
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10019925 [exp]	102.6	0.7231
AT2G36220			unknown protein		Lus10022709 [exp]	122.5	0.7096
AT1G64980			Nucleotide-diphospho-sugar tra...		Lus10005005 [exp]	184.9	0.7094

Compare expression of checked genes

Lus10035125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.