Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02130 389 / 4e-119 TOAD2, RPK2, CLI1 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) AT4G20140 258 / 8e-72 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G63930 253 / 1e-70 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 248 / 7e-69 Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 230 / 1e-62 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G08850 227 / 7e-62 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT5G44700 223 / 4e-60 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G46330 221 / 1e-59 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G48940 217 / 2e-58 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G73080 214 / 3e-57 ATPEPR1, PEPR1 PEP1 receptor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031976 [exp] 847 / 0 AT3G02130 531 / 2e-175 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10010087 [exp] 421 / 3e-131 AT3G02130 962 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10007206 [exp] 419 / 3e-130 AT3G02130 964 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10019036 [exp] 239 / 8e-66 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10036251 [exp] 223 / 4e-60 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10019035 [exp] 219 / 5e-59 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10023681 [exp] 211 / 7e-57 AT2G33170 1152 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10039030 [exp] 209 / 7e-56 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1) Lus10019248 [exp] 208 / 1e-55 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G144600 [exp] 780 / 0 AT3G02130 785 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.017G094400 [exp] 418 / 6e-130 AT3G02130 1405 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.004G120500 [exp] 412 / 7e-128 AT3G02130 1375 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.008G096400 [exp] 391 / 3e-120 AT3G02130 1140 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.011G139700 [exp] 251 / 6e-70 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G129100 [exp] 239 / 2e-65 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.008G009300 [exp] 233 / 1e-63 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1) Potri.003G156200 [exp] 232 / 4e-63 AT4G20140 1394 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.013G051300 [exp] 231 / 6e-63 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G065400 [exp] 231 / 6e-63 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10035126 pacid=23162376 polypeptide=Lus10035126 locus=Lus10035126.g ID=Lus10035126.BGIv1.0 annot-version=v1.0 ATGGCGGCACCACTCCTCTGTTTTCTGTTCCTTGCCATCTTAGCTGCTTCTTCTTCTTCTTCTTCCCTTTCCCAGCCTACCGCAGATGACTCACAGTCTC TTCTCACCTTCAAAAAGTCCATCACCAGCGACCCTTCAAACCTCCTATCTTCCTGGCGCTCTTCCTCTTCTTCCACGTACTGTTCCTGGTTCGCCGTACT CTGCGACTCCAAATCCCGTCGAGTCATCTCCTTGAACTTCACTACTTCTTCTACCGCCAACGCTTCTTCATCTCTCGTTGGTACTCTCCCTGACTCCATC GGCGACCTCTTTGCTCTCCGTGCCCTTGTCATCTCCCACCACCGATTCTCCTGCCAGATCCCGGCTTCCCTCTCCGACCTCCGCTCCCTCGAGGTGATCG AGCTCCAGGGAAACAACTTCTCCGGAGAAATCCCTAGCCAGATTTCCTCCCTTCCTTCCTTGCGGCTCCTCAACTTGTCTTCCAATTCGTTCTCCGGTCA GATTCCTTCTGGTTTGATCGGTAGTGACGGATCATTGGCCGCAGTTGATCTCTCCAACAACCAGCTCAAAGGTGAAATTCCCGTCGCTAGGGTAGGCAAC TGCTCCAATCTCGTCCACTTGAAGCTCTCTAATAATTACCTGGAGAAGACGATCCCGTCCACCATCGGTAAGTGTAAGAACTTGAGGACTTTGCTGCTCG ACGGAAACATCCTCCAAGGAGCAATCGCTCCGGAGATTGGTCAGATCTCGGAGCTTCGTATCCTTGACGTTTCCACCAACAGTCTGACCGACTCAATCCC CGACGAGCTGGCCAATTGCCGTAACCTGGCGGTTCTCGTCCTCACTAATGCTTCCAATTTCGTCGTCCCTTCGGATATCGTCGACGCTGATTCGAGGTTA GAGTTCAACGCTTTTGAAAGCGGGATTCCTCATGATGTGTTGACACTACCGAATCTGCAGATTCTGTGGGCACCCAGGGCCAATTTGGATGGTGGATTGC CTTCCAATTGGACTTCCTCTTGTTCCCTCAGAGTTCTTCAGCTGGGACAGAATGCTTTCGCCGGCGATCTACCTCAAGCTCTTGGAGCCGCCTGTACTAA TCTCACTGTCTTAGATTTGAGTTCCAATAACTTGACTGGAAACGTTCATGTGCAGCTGCCAGTCTCTTGTATGGTGTATTTCAATCTCAGTCAGAACCAT TTCTCTGGTGTTCTCCCGGCTTTCCCAAAAGGTAGTAAGTGCGATGGTAGCATGATTGGCTACGGAAGCAACTTAGATGTGGAGGATGTAAGATTTGCGT ACTCTAACATCCCTGCTTGGGGGTCTCAGATGAATGCTCTTCTTCTCGAGGGCGGAAAGAATGATGATGACGAGTTCATGATCATCCATGATCTCAGCTG GAATAAACTGAGTGGCGCCTTGCCAGCCTTCTCCATAAGTGATGGTTTCTTAGCAGCAGCTAATAGGAAAACTGCTTACAGGTTGCTTTTGAACGAGAAC ATGTTCAATGGATCCTTTCCTGTTGAATTGGTACCGCAATGCGATGATCTAATCGGTTTGTCTGTTAACTTGAGTGCCAATGATCTCTCCTTTAGTATTC AGCATCTGCAGCTCCTCAACTGTTCCAAGGTTAAGGAGTTTGAAGCAGCTCAAAACCGTATAGATGGTTCACTGACTCCTACCACCATTGGCAATCTGGT AAAACTTCAGTCTTTTGACTTGAGGGGAAACAGTCTAACTGGTTCAATACCTGCTGAATTGGGTGCTATGAAACTCATGAAGTCCATGCTTCTTGGAAGC AACAATTTGACTGGAGACATTCCAGCTCAGCTAGGTGAAATGACTTCTCTTGTGACCCTAGATCTCTCTCACAATTTTATCACAGGATCGATCCCTGGAA GTTTAGCAGATGCGAAGAGCATGGAAATTATGCTGCTTAACAACAATCATCTCTCTGGAGAGATACCTTCATCATTTTCTAATCTTTCCAATCTGAAAGA GCTAGATGTTTCTTATAATAACCTCTCAGGCCCTATACCGCTTCTCCACTACCGCATAGATTGCAATCAATTCGCAGGAAACGCATACTTGGTTACGTGT TCAGAGCCAATGGCAAGCTCGCCGAATTCATCGATAGAAGAAAGTCATGTGACGCAGCGTCGGAAGAATAACAGTAGGGTGTTTTTGATTGCTCTGATAA CTTCTATCTCTGTCATACTTGTGGTCTCGTTGGTTGTGGTTGTATGGAAGCTGTATCGAAAGAGAACATTGATAAGCCAGCAACAAGGTAGCTTGAGAGG CAAAGTAGTTGTGACGTTTGCAGATGCTCCAGCTGAGCTGAACTACGATAATGTGTTGAAATCTACTGGCAACTTCAGTGTTAGGTATCTGATTGGCACG GGTGGCTTTGGGGCAACTTACAAAGCAGAGATAGTTCCTGGCTACTTTGTTGCTGTTAAGAGGCTGTCAATTGGTAAGATTCAGGGGAGTAAACAGTTTG ATGCGGAGATCAGAACGTTGGGTCGTGTGTGCCGAAGATACTCCATCGGGACATCAAACCCAGCAACATATTACTGGACGACGAGCTCAATGCTTATCTC TCCGATTTCGGCTTGGCCAGGCTGTTAG
AA sequence Show only first row Show all	>Lus10035126 pacid=23162376 polypeptide=Lus10035126 locus=Lus10035126.g ID=Lus10035126.BGIv1.0 annot-version=v1.0 MAAPLLCFLFLAILAASSSSSSLSQPTADDSQSLLTFKKSITSDPSNLLSSWRSSSSSTYCSWFAVLCDSKSRRVISLNFTTSSTANASSSLVGTLPDSI GDLFALRALVISHHRFSCQIPASLSDLRSLEVIELQGNNFSGEIPSQISSLPSLRLLNLSSNSFSGQIPSGLIGSDGSLAAVDLSNNQLKGEIPVARVGN CSNLVHLKLSNNYLEKTIPSTIGKCKNLRTLLLDGNILQGAIAPEIGQISELRILDVSTNSLTDSIPDELANCRNLAVLVLTNASNFVVPSDIVDADSRL EFNAFESGIPHDVLTLPNLQILWAPRANLDGGLPSNWTSSCSLRVLQLGQNAFAGDLPQALGAACTNLTVLDLSSNNLTGNVHVQLPVSCMVYFNLSQNH FSGVLPAFPKGSKCDGSMIGYGSNLDVEDVRFAYSNIPAWGSQMNALLLEGGKNDDDEFMIIHDLSWNKLSGALPAFSISDGFLAAANRKTAYRLLLNEN MFNGSFPVELVPQCDDLIGLSVNLSANDLSFSIQHLQLLNCSKVKEFEAAQNRIDGSLTPTTIGNLVKLQSFDLRGNSLTGSIPAELGAMKLMKSMLLGS NNLTGDIPAQLGEMTSLVTLDLSHNFITGSIPGSLADAKSMEIMLLNNNHLSGEIPSSFSNLSNLKELDVSYNNLSGPIPLLHYRIDCNQFAGNAYLVTC SEPMASSPNSSIEESHVTQRRKNNSRVFLIALITSISVILVVSLVVVVWKLYRKRTLISQQQGSLRGKVVVTFADAPAELNYDNVLKSTGNFSVRYLIGT GGFGATYKAEIVPGYFVAVKRLSIGKIQGSKQFDAEIRTLGRVCRRYSIGTSNPATYYWTTSSMLISPISAWPGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10035126 [exp]	0	1
AT5G65630		GTE7	global transcription factor gr...		Lus10010524 [exp]	2.4	0.8168
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10000715 [exp]	4.9	0.7703
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10023378 [exp]	8.8	0.7740
AT2G22480		PFK5	phosphofructokinase 5 (.1)		Lus10002648 [exp]	10.7	0.7151
AT1G35780			unknown protein		Lus10033456 [exp]	13.2	0.7506
AT5G53760		ATMLO11, MLO11	MILDEW RESISTANCE LOCUS O 11, ...		Lus10032669 [exp]	14.1	0.7236
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Lus10020120 [exp]	19.0	0.7658
AT5G35570			O-fucosyltransferase family pr...		Lus10017171 [exp]	21.0	0.7374
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10032377 [exp]	25.8	0.7388
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Lus10035064 [exp]	29.7	0.7459

Compare expression of checked genes

Lus10035126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.