Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19340 725 / 0 Protein of unknown function (DUF3754) (.1) AT5G13940 539 / 0 aminopeptidases (.1) AT2G46915 92 / 1e-19 Protein of unknown function (DUF3754) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031975 [exp] 947 / 0 AT3G19340 754 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10012581 [exp] 835 / 0 AT3G19340 787 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10041512 [exp] 805 / 0 AT3G19340 756 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10041510 [exp] 518 / 0 AT3G19340 579 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10012584 [exp] 357 / 6e-118 AT3G19340 589 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10004371 [exp] 160 / 2e-42 AT5G47240 410 / 2e-139 nudix hydrolase homolog 8 (.1) Lus10010092 [exp] 85 / 4e-17 AT2G46915 704 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10007214 [exp] 83 / 2e-16 AT2G46915 699 / 0.0 Protein of unknown function (DUF3754) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G237700 [exp] 767 / 0 AT3G19340 813 / 0.0 Protein of unknown function (DUF3754) (.1) Potri.014G144300 [exp] 739 / 0 AT3G19340 771 / 0.0 Protein of unknown function (DUF3754) (.1) Potri.014G144500 [exp] 623 / 0 AT3G19340 640 / 0.0 Protein of unknown function (DUF3754) (.1) Potri.002G183900 [exp] 88 / 5e-18 AT2G46915 744 / 0.0 Protein of unknown function (DUF3754) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12576 [flax] [poplar] DUF3754 Protein of unknown function (DUF3754)
Representative CDS sequence Show only first row Show all	>Lus10035127 pacid=23162565 polypeptide=Lus10035127 locus=Lus10035127.g ID=Lus10035127.BGIv1.0 annot-version=v1.0 ATGAAGAATAGCAATGGCGGAAGTGGGGTGGCGAAGAAGAAGAAGAAGAAGAGGGAAGTAATTCGTCTGGAAAAGGAATCTGTCATTCCAATCCTCAAAC CCAGGCTCATAATGACCTTGGCCAACCTCATTGAACAAAGCTCCGACCGTGACGAGTTCCTGAAGCTCTGCAAGCGAGTTGAGTACACCATCCGAGCTTG GTACCTTCTCCAGTTTGAAGATCTCATGCAACTATATTCCCTCTTCGATCCTGTTTCTGGAGGGCAGAAACTGAAACAGCAGCATCTTACCTCTGACGAT ATCCACAATCTAGAACAGAATTTCCTTGGCTACTTGTTTCAGGTGATGGCTAAGAGTAACTTCAAAATAGCAACTGATGAGGAGATTGAAGTTGCCCTCT CAGGCCAGTATCTTTCTAATCTCCCTATAAAAGTTGACGAGTCTAAGCTTGACAAGAAACTCTTGAGCAGTTATTTCGAGAATCATCCTCATCCCCACCT TCCGGATTTCGCAAACAAGTATGTTATCTTTCGTCGTGGCATTGGAATTGATCAGACTACTGGCTATTTCTTCATGGAGAAAGTCGACATGCTTATTGGT CGTTTTTGGGCATATCTACTTAGGCTTACAAGGCTGGATAAACTTTTCTTGAGAAAGCCAAAAAAACAGCGGAGAATGCTGACTGTGGATGATGATGACG ACGTTAATGCTGAGGAAAACATAGATAACTTTTGTGTGGAACGTATCCGCCTTGAGAATATGGAACTTAGTACAAGGAGCTTACTGAGCAATACTACAAT TCAAGAACCTACATTTGACAGGATAATAGTCCTCTATCGGGGAGCAGGTACCAAGGAGAAACCTGATCATGGTATCTACGTGAAACATTTCAAAAATATT CCAATGGCTGATATGGAAATAGTTCTTCCAGAAAAGAGAAATCCTGGGTTAACTCCAAAGGACTGGGTCACCTTCCTAGTTTCTGCTATAGTTGGACTGT TTGCAGTGGTTAGTTCAATTGAATCTCCAAAGGATGATCTCTGGGTTATGTTGGCTGTCCTTTCAACAGTGGTTGGTTACTGTGCTAAGACATACTTCAC TTATCAGCAAAACATGGCTGCATATCAGAACTTGATCACGCAGTCTATGTATGATAAACAGTTAGACAGTGGAAGGGGCACACTTCTCCACCTTTGTGAC GATGTGATCCAGCAAGAAGTGAAAGAGGTGATACTTTCATTCTACATACTGATGGAACAAGGCAAGGCTACCAGGCAGGATTTGGATTTGCGATGTGAGG AACTGCTGACAGAAGAGTTCGGAGAAAGCTGCAATTACGACGTAGACGACGCAGTTGACAAGTTGGAGAAGCTAGGCATTGTTTCCAGGGACTCCTTGTC GAGATATTACTGCGTGGGACTGAAGAGGGCTAACGAGATAATCGGGACCACGACTGAAGAGCTTGTGCTGAAGGCCAGGCAAGGTCTTAGGACCCAATGA
AA sequence Show only first row Show all	>Lus10035127 pacid=23162565 polypeptide=Lus10035127 locus=Lus10035127.g ID=Lus10035127.BGIv1.0 annot-version=v1.0 MKNSNGGSGVAKKKKKKREVIRLEKESVIPILKPRLIMTLANLIEQSSDRDEFLKLCKRVEYTIRAWYLLQFEDLMQLYSLFDPVSGGQKLKQQHLTSDD IHNLEQNFLGYLFQVMAKSNFKIATDEEIEVALSGQYLSNLPIKVDESKLDKKLLSSYFENHPHPHLPDFANKYVIFRRGIGIDQTTGYFFMEKVDMLIG RFWAYLLRLTRLDKLFLRKPKKQRRMLTVDDDDDVNAEENIDNFCVERIRLENMELSTRSLLSNTTIQEPTFDRIIVLYRGAGTKEKPDHGIYVKHFKNI PMADMEIVLPEKRNPGLTPKDWVTFLVSAIVGLFAVVSSIESPKDDLWVMLAVLSTVVGYCAKTYFTYQQNMAAYQNLITQSMYDKQLDSGRGTLLHLCD DVIQQEVKEVILSFYILMEQGKATRQDLDLRCEELLTEEFGESCNYDVDDAVDKLEKLGIVSRDSLSRYYCVGLKRANEIIGTTTEELVLKARQGLRTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19340			Protein of unknown function (D...		Lus10035127 [exp]	0	1
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10009430 [exp]	1.0	0.8986
AT4G19830			FKBP-like peptidyl-prolyl cis-...		Lus10036206 [exp]	3.5	0.8654
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10022278 [exp]	3.9	0.8895
AT3G52950			CBS / octicosapeptide/Phox/Bem...		Lus10025698 [exp]	3.9	0.8715
AT1G03260			SNARE associated Golgi protein...		Lus10012371 [exp]	4.0	0.8499
AT5G58260		NdhN	NADH dehydrogenase-like comple...		Lus10019123 [exp]	4.0	0.8838
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10017967 [exp]	5.1	0.8910
AT5G41120			Esterase/lipase/thioesterase f...		Lus10012560 [exp]	5.5	0.8579
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10022735 [exp]	7.1	0.8376
AT4G12010			Disease resistance protein (TI...		Lus10015648 [exp]	7.6	0.8325

Compare expression of checked genes

Lus10035127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.