Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47930 39 / 0.0002 Zinc-binding ribosomal protein family protein (.1) AT3G61110 0 / 1 ARS27A ribosomal protein S27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035122 [exp] 86 / 1e-21 AT3G61110 176 / 2e-59 ribosomal protein S27 (.1) Lus10031974 [exp] 77 / 3e-18 AT3G61110 176 / 2e-59 ribosomal protein S27 (.1) Lus10031979 [exp] 61 / 2e-12 AT3G61110 173 / 2e-58 ribosomal protein S27 (.1) Lus10024576 [exp] 0 / 1 AT3G61110 174 / 1e-57 ribosomal protein S27 (.1) Lus10032212 [exp] 0 / 1 AT3G61110 173 / 2e-58 ribosomal protein S27 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035128 pacid=23162583 polypeptide=Lus10035128 locus=Lus10035128.g ID=Lus10035128.BGIv1.0 annot-version=v1.0 ATGAAGCAAACTGCAAATCCAACAGACATCCACTTGCGTGAGAGCGGCTACCGACCTCATCCTTCTCTCCATAATTCCTTGGGCTTTGAGAAACTGGACT CATTTTATGATTTGGTGCTTCAAAACGATGTTGATTTGCTGAACCCACCGGCCGAGCTTGAGAAGAGAAAACATAAGCTCAAGCGTCTCGTCCAGTCCCC CAATTCCTTCTTCATGCAAGGTCTAATGATGCATTTGTCTCACTTTGATGAATCTGCAGAACCACGGTGTTCAGCCACTCGCAGACAGTTGTCGTTTGTG GAAACTGCCAAACAGTGCTGTGCCAGCCTACCGGAGGACGTGCGAGACTCACTGAGGGATGCTCTTTCAGGAGGAAGGGGGACTAGTTTTCTTCAACAAC AAGCCTCAAAGCCGTACCCACAACCTCCTTCAAACGTTTCTGTCAATCAACATCCCACCATGCAACCTCCACCACCGCAATTGACCATCGCCAATCAGGT GGTTATGATACCCACCATGCATGCGTTGCAACCGCAAGCCACACCACCACCGCTAATGAGGAAGAAGTTGAAAATTTCGCTTTTGAGGATAGCGAGAAAG ATGAAACGGTATGCTCCACGAAGTTCATCGCTAGTGGAGTAG
AA sequence Show only first row Show all	>Lus10035128 pacid=23162583 polypeptide=Lus10035128 locus=Lus10035128.g ID=Lus10035128.BGIv1.0 annot-version=v1.0 MKQTANPTDIHLRESGYRPHPSLHNSLGFEKLDSFYDLVLQNDVDLLNPPAELEKRKHKLKRLVQSPNSFFMQGLMMHLSHFDESAEPRCSATRRQLSFV ETAKQCCASLPEDVRDSLRDALSGGRGTSFLQQQASKPYPQPPSNVSVNQHPTMQPPPPQLTIANQVVMIPTMHALQPQATPPPLMRKKLKISLLRIARK MKRYAPRSSSLVE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10035128 [exp]	0	1
AT5G09510			Ribosomal protein S19 family p...		Lus10041168 [exp]	2.4	0.8709
AT3G02080			Ribosomal protein S19e family ...		Lus10021865 [exp]	2.6	0.9090
AT2G45640		ATSAP18, HDA19	SIN3 ASSOCIATED POLYPEPTIDE 18...		Lus10041388 [exp]	5.7	0.8430
AT5G12110			Glutathione S-transferase, C-t...		Lus10026784 [exp]	10.8	0.8499
AT4G27680			P-loop containing nucleoside t...		Lus10022361 [exp]	11.2	0.7847
AT5G64140		RPS28	ribosomal protein S28 (.1)		Lus10013543 [exp]	13.5	0.8091
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Lus10017042 [exp]	13.8	0.8175
AT5G47320		RPS19	ribosomal protein S19 (.1)		Lus10027711 [exp]	14.0	0.8480
AT1G69630			F-box/RNI-like superfamily pro...		Lus10024695 [exp]	15.5	0.7886
AT3G02080			Ribosomal protein S19e family ...		Lus10010339 [exp]	16.4	0.8489

Compare expression of checked genes

Lus10035128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.