Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13680 422 / 7e-148 PLC-like phosphodiesterases superfamily protein (.1) AT5G67130 382 / 5e-131 PLC-like phosphodiesterases superfamily protein (.1) AT1G49740 372 / 4e-128 PLC-like phosphodiesterases superfamily protein (.1) AT4G36945 348 / 7e-118 PLC-like phosphodiesterases superfamily protein (.1) AT3G19310 330 / 6e-111 PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031973 [exp] 679 / 0 AT1G13680 435 / 1e-153 PLC-like phosphodiesterases superfamily protein (.1) Lus10012600 [exp] 583 / 0 AT1G13680 440 / 5e-155 PLC-like phosphodiesterases superfamily protein (.1) Lus10000649 [exp] 444 / 4e-156 AT1G13680 435 / 4e-153 PLC-like phosphodiesterases superfamily protein (.1) Lus10009368 [exp] 365 / 3e-124 AT5G67130 580 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10014072 [exp] 364 / 5e-124 AT1G49740 522 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10019843 [exp] 360 / 1e-122 AT1G49740 524 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10019339 [exp] 340 / 4e-114 AT4G36945 462 / 1e-161 PLC-like phosphodiesterases superfamily protein (.1) Lus10012665 [exp] 233 / 7e-76 AT1G49740 273 / 4e-92 PLC-like phosphodiesterases superfamily protein (.1) Lus10000092 [exp] 147 / 1e-42 AT4G36945 188 / 2e-58 PLC-like phosphodiesterases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G144900 [exp] 525 / 0 AT1G13680 462 / 2e-163 PLC-like phosphodiesterases superfamily protein (.1) Potri.017G098900 [exp] 520 / 0 AT1G13680 450 / 3e-159 PLC-like phosphodiesterases superfamily protein (.1) Potri.004G117500 [exp] 501 / 1e-178 AT1G13680 447 / 8e-158 PLC-like phosphodiesterases superfamily protein (.1) Potri.005G139400 [exp] 375 / 1e-128 AT4G36945 505 / 4e-179 PLC-like phosphodiesterases superfamily protein (.1) Potri.007G045700 [exp] 374 / 6e-128 AT5G67130 591 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.005G140100 [exp] 375 / 7e-128 AT5G67130 572 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.004G140200 [exp] 371 / 5e-127 AT1G49740 548 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.007G045200 [exp] 365 / 2e-124 AT4G36945 520 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.009G100332 [exp] 246 / 6e-80 AT1G49740 341 / 9e-118 PLC-like phosphodiesterases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035130 pacid=23162412 polypeptide=Lus10035130 locus=Lus10035130.g ID=Lus10035130.BGIv1.0 annot-version=v1.0 ATGAGGTGGATGCTGGCGGCGGCGGCGGCGGTATTCCTCAGTTGTTGTTCAACCATAGCGTATGGATGCTCGTCGGACCAAGATTGTGGGGCCGGACGCT ACTGTTTCAGTTGCGTGGACACGGCGGAGTCGGGGTCTGTTTGTGTCAGATCCACCGCCACTAACCAGTTCCAGCTCCTGAACAATTCTCTGCCGTTCAA CAAATACGCATTCTTAACAACACACAACGCATTCGCCATCGACAATTATCCACTCCACACTCCAATTCCTCGAGTCACTGAAACAAATCAAGAAGACAGC ATCACGGAACAGCTCAATAACGGCGTCCGGGCATTGATGCTGGACACATACGATTTCCAGGGTGACGTCTGGATGTGCCATTCCTTCGGTGGAAACTGCC ATGACTTCACTGCATTTGGTCCAGCAATTGACTACCTGAGGGAGATTGAGGCGTTCATGTCTGCAAACCCATCAGAGGTTGTGACGATCATCCTGGAAGA CTATGTCCATGCTGCCAATGGGTTGACCAAAGTCTTCACCGACGCCGGCCTCATGAAGTACTGGTTCCCTGTCTCGAATATGCCTAAGAACGGTTCCGGA GACTGGCCGTTGGTTAGTGACATGGTGAAGAACAACCAGAGGCTGATTGTCTTCACTTCCGTACAGTCCAAGGAATCTAGTGAAGGAATCGCTTACCAGT GGACTTACATGGTTGAGAACCAATATGGAGATGGAGGGATGAAGACAGGGAGCTGCCCGAACAGAGCGGAATCAGCACCGATGGACGACAAAACGAAGTC GTTGGTGCTGATGAACTTCTTCAGGTCGGTACCAATGGAGGACTTAGCTTGTGGGGATAACTCTGGGAGTCTGATGGACATGGTAACAACCTGTGAGGTC GCTGCTGGGAACAGATGGGCTAATTTCCTTGCTGTCGATTACTACAAGAGAAGTGAAGGTGGAGGAGCCTTCCAAGCTATGGATACTCTTAACGGGAAGC TACTCTGCGGCTGCGATGATGTTCATGGATGCGTGGTCGTCGACGGAGGGAATCAGAGTATTGTCGGCCGCCTGAAAAAGACCATCGACGACTTCAACAA CAGGTCGGCTAACCTTTGTTAA
AA sequence Show only first row Show all	>Lus10035130 pacid=23162412 polypeptide=Lus10035130 locus=Lus10035130.g ID=Lus10035130.BGIv1.0 annot-version=v1.0 MRWMLAAAAAVFLSCCSTIAYGCSSDQDCGAGRYCFSCVDTAESGSVCVRSTATNQFQLLNNSLPFNKYAFLTTHNAFAIDNYPLHTPIPRVTETNQEDS ITEQLNNGVRALMLDTYDFQGDVWMCHSFGGNCHDFTAFGPAIDYLREIEAFMSANPSEVVTIILEDYVHAANGLTKVFTDAGLMKYWFPVSNMPKNGSG DWPLVSDMVKNNQRLIVFTSVQSKESSEGIAYQWTYMVENQYGDGGMKTGSCPNRAESAPMDDKTKSLVLMNFFRSVPMEDLACGDNSGSLMDMVTTCEV AAGNRWANFLAVDYYKRSEGGGAFQAMDTLNGKLLCGCDDVHGCVVVDGGNQSIVGRLKKTIDDFNNRSANLC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13680			PLC-like phosphodiesterases su...		Lus10035130 [exp]	0	1
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10018009 [exp]	2.0	0.8592
AT2G25625			unknown protein		Lus10008096 [exp]	6.6	0.8040
AT2G23770			protein kinase family protein ...		Lus10022488 [exp]	9.5	0.7678
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10003875 [exp]	13.4	0.8023
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Lus10008054 [exp]	13.6	0.7029
AT5G20700			Protein of unknown function (D...		Lus10022948 [exp]	16.4	0.7416
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10042005 [exp]	18.1	0.8025
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10012691 [exp]	18.7	0.7177
AT5G23070			Thymidine kinase (.1)		Lus10016925 [exp]	18.7	0.7187
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10027990 [exp]	19.6	0.6908

Compare expression of checked genes

Lus10035130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.