Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G09990 259 / 3e-90 Ribosomal protein S5 domain 2-like superfamily protein (.1) AT5G18380 258 / 5e-90 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3) AT3G04230 243 / 3e-84 Ribosomal protein S5 domain 2-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031970 [exp] 303 / 2e-107 AT2G09990 258 / 4e-90 Ribosomal protein S5 domain 2-like superfamily protein (.1) Lus10034378 [exp] 291 / 8e-103 AT5G18380 261 / 4e-91 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3) Lus10038012 [exp] 290 / 1e-102 AT2G09990 258 / 5e-90 Ribosomal protein S5 domain 2-like superfamily protein (.1) Lus10009252 [exp] 290 / 1e-102 AT2G09990 258 / 5e-90 Ribosomal protein S5 domain 2-like superfamily protein (.1) Lus10012599 [exp] 289 / 5e-102 AT5G18380 261 / 4e-91 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G304700 [exp] 274 / 3e-96 AT2G09990 267 / 9e-94 Ribosomal protein S5 domain 2-like superfamily protein (.1) Potri.008G150000 [exp] 272 / 2e-95 AT2G09990 262 / 1e-91 Ribosomal protein S5 domain 2-like superfamily protein (.1) Potri.010G091000 [exp] 271 / 4e-95 AT2G09990 260 / 7e-91 Ribosomal protein S5 domain 2-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF00380 [flax] [poplar] Ribosomal_S9 Ribosomal protein S9/S16
Representative CDS sequence Show only first row Show all	>Lus10035133 pacid=23162536 polypeptide=Lus10035133 locus=Lus10035133.g ID=Lus10035133.BGIv1.0 annot-version=v1.0 ATGGCGGCAACTGCTGCGCCTTCCCCAGTAGAGTCCGTCCAATGCTTCGGCCGCAAGAAGACGGCGGTGGCCGTCACCCACTGCAAGCGCGGCAGGGGAC TCATCAAGCTCAACGGAACTCCGATCGAGCTCATCGAACCTGAGATCCTCCGCTTCAAGGCCGTTGAGCCCATCCTCCTCCTCGGACGTCAGCGTTTCAG CGGTGTCGACATGCGCATCCGCGTGAAGGGAGGCGGTCACACTTCCCAGATCTACGCCATCCGTCAGAGCATCGCCAAGGCACTCGTCGCTTTCTACCAG AAGTTTGTGGATGAGCAGAGCAAGAAGGAAATCAAGGACCTCTTGATCAGGTATGACAGGACTTTGCTGGTTGCTGATCCCAGGCGCTGCGAGCCGAAGA AGTTTGGTGGACGTGGTGCCCGCTCCAGATTCCAGAAGAGTTACCGTTGA
AA sequence Show only first row Show all	>Lus10035133 pacid=23162536 polypeptide=Lus10035133 locus=Lus10035133.g ID=Lus10035133.BGIv1.0 annot-version=v1.0 MAATAAPSPVESVQCFGRKKTAVAVTHCKRGRGLIKLNGTPIELIEPEILRFKAVEPILLLGRQRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQ KFVDEQSKKEIKDLLIRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G09990			Ribosomal protein S5 domain 2-...		Lus10035133 [exp]	0	1
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10015588 [exp]	4.7	0.9581
AT5G09510			Ribosomal protein S19 family p...		Lus10033856 [exp]	5.5	0.9526
AT4G15000			Ribosomal L27e protein family ...		Lus10003814 [exp]	5.5	0.9443
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10017648 [exp]	5.7	0.9543
AT1G09640			Translation elongation factor ...		Lus10002536 [exp]	7.9	0.9492
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10035786 [exp]	10.8	0.9499
AT2G41840			Ribosomal protein S5 family pr...		Lus10030130 [exp]	12.6	0.9497
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10004743 [exp]	16.6	0.9493
AT5G35530			Ribosomal protein S3 family pr...		Lus10030503 [exp]	17.0	0.9477
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10027192 [exp]	21.4	0.9379

Compare expression of checked genes

Lus10035133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.