Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15640 455 / 8e-162 Mitochondrial substrate carrier family protein (.1) AT1G72820 255 / 7e-83 Mitochondrial substrate carrier family protein (.1) AT5G26200 227 / 4e-72 Mitochondrial substrate carrier family protein (.1) AT1G07030 99 / 2e-23 Mitochondrial substrate carrier family protein (.1) AT2G30160 95 / 7e-22 Mitochondrial substrate carrier family protein (.1) AT1G34065 87 / 3e-19 SAMC2 S-adenosylmethionine carrier 2 (.1) AT5G42130 86 / 2e-18 AtMfl1 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) AT4G11440 84 / 1e-17 Mitochondrial substrate carrier family protein (.1) AT4G39460 83 / 1e-17 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT2G35800 77 / 3e-15 SAMTL S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041498 [exp] 522 / 0 AT5G15640 494 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10012597 [exp] 516 / 0 AT5G15640 488 / 9e-173 Mitochondrial substrate carrier family protein (.1) Lus10031969 [exp] 502 / 0 AT5G15640 404 / 3e-143 Mitochondrial substrate carrier family protein (.1) Lus10026468 [exp] 225 / 5e-71 AT5G26200 416 / 7e-146 Mitochondrial substrate carrier family protein (.1) Lus10025015 [exp] 224 / 7e-71 AT5G26200 414 / 3e-145 Mitochondrial substrate carrier family protein (.1) Lus10026466 [exp] 219 / 2e-68 AT5G26200 409 / 5e-143 Mitochondrial substrate carrier family protein (.1) Lus10026395 [exp] 92 / 1e-20 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1) Lus10042258 [exp] 89 / 7e-20 AT2G30160 484 / 2e-173 Mitochondrial substrate carrier family protein (.1) Lus10029770 [exp] 84 / 7e-18 AT5G42130 478 / 5e-169 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G117000 [exp] 495 / 2e-177 AT5G15640 434 / 1e-153 Mitochondrial substrate carrier family protein (.1) Potri.017G098500 [exp] 485 / 8e-174 AT5G15640 460 / 3e-164 Mitochondrial substrate carrier family protein (.1) Potri.008G100100 [exp] 293 / 7e-98 AT5G15640 338 / 5e-116 Mitochondrial substrate carrier family protein (.1) Potri.018G050300 [exp] 232 / 6e-74 AT1G72820 435 / 2e-153 Mitochondrial substrate carrier family protein (.1) Potri.006G223600 [exp] 226 / 1e-71 AT1G72820 429 / 7e-151 Mitochondrial substrate carrier family protein (.1) Potri.016G125200 [exp] 100 / 5e-24 AT1G07030 436 / 1e-154 Mitochondrial substrate carrier family protein (.1) Potri.001G282400 [exp] 90 / 4e-20 AT1G07030 426 / 1e-150 Mitochondrial substrate carrier family protein (.1) Potri.009G077600 [exp] 89 / 5e-20 AT1G07030 425 / 4e-150 Mitochondrial substrate carrier family protein (.1) Potri.005G197200 [exp] 89 / 8e-20 AT4G39460 417 / 3e-147 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.005G085900 [exp] 88 / 1e-19 AT4G39460 487 / 9e-175 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10035134 pacid=23162467 polypeptide=Lus10035134 locus=Lus10035134.g ID=Lus10035134.BGIv1.0 annot-version=v1.0 ATGGACAAATCTACCAACGTCCGACAACCTTCCTTTGGCCACACCGAGATCAATTGGGACAAGCTTGACAAGACTAAACTTTATGTCGTGGGAGCTGGCA TTTTCACTGGGATTACTGTAGCACTGTATCCTATTTCTGTTATAAAAACTAGGCTCCAGGTTGCTACAAAGGATACAGGTGAGAGAAATGCATTTTCTGT CATCAGAGGCTTAGTGAAGACGGATGGTATTCCTGGCCTATACCGGGGGTTTGGCACAGTGATAACTGGGGCTGTCCCTGCCAGGATTATTTTTCTCACT GCTTTAGAGACTACTAAAGTGGCTTCTTTCAAAATGGTCGAGTCATTCAAGTTATCAGAAGCTTCAGAAGCTGCCGTTGCAAATGGAATTGCTGGCATGG CAGCATCTTTTTGCTCACAGGGTGTGTTCGTTCCAATTGACGTGGTCAGTCAAAAGTTGATGGTCCAAGGATATTCTGGTCATGAGAAATATAAGGGGGG TCTAGATGTTGCTCGAAAGGTCATTAAAAGTGATGGGATCCGTGGATTGTACAGGGGATTTGGACTTTCAGTCATGACTTACTCTCCATCGAGCGCTGTA TGGTGGGCGAGCTATGGTTCAAGCCAACGAATTATATGGAGGTATCTAGGTTATGGTACTGATCCTGAGCCTGCTGCCCCTAGTGGGATGAACATAGCTC TAGTTCAAGCTGCGGGAGGGGTTATTGCAGGAGCAACTGCTTCCTGCATCACAACCCCGTTGGATACAATAAAAACACGGTTACAGGTGATGGGGCATGA AAGGAAAAGCTCAGCTAGACAGGTGGTCAAAAACTTGGTAAATGATAGTGGTTGGCTTGGATTATACAAAGGGCTTGGACCAAGATTTCTTAGCAGCTCA TTATGGGGAACCTCCATGATATTAGCATACGAATATATGAGCGTTATTTCCGAAGGGCAGGTGAATGCCTTTGCGTTTTCAGCTGTGATGGCACTGGAAA GTTTCGCAAAAAACTATGTCTTAACTGAGGAGCTATAG
AA sequence Show only first row Show all	>Lus10035134 pacid=23162467 polypeptide=Lus10035134 locus=Lus10035134.g ID=Lus10035134.BGIv1.0 annot-version=v1.0 MDKSTNVRQPSFGHTEINWDKLDKTKLYVVGAGIFTGITVALYPISVIKTRLQVATKDTGERNAFSVIRGLVKTDGIPGLYRGFGTVITGAVPARIIFLT ALETTKVASFKMVESFKLSEASEAAVANGIAGMAASFCSQGVFVPIDVVSQKLMVQGYSGHEKYKGGLDVARKVIKSDGIRGLYRGFGLSVMTYSPSSAV WWASYGSSQRIIWRYLGYGTDPEPAAPSGMNIALVQAAGGVIAGATASCITTPLDTIKTRLQVMGHERKSSARQVVKNLVNDSGWLGLYKGLGPRFLSSS LWGTSMILAYEYMSVISEGQVNAFAFSAVMALESFAKNYVLTEEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15640			Mitochondrial substrate carrie...		Lus10035134 [exp]	0	1
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10021478 [exp]	2.4	0.9340
AT3G50120			Plant protein of unknown funct...		Lus10010064 [exp]	6.2	0.9205
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10043298 [exp]	9.6	0.8838
AT2G41810			Protein of unknown function, D...		Lus10031067 [exp]	10.2	0.9025
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031696 [exp]	14.7	0.9121
AT4G12010			Disease resistance protein (TI...		Lus10028058 [exp]	14.8	0.8944
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Lus10023865 [exp]	16.2	0.8666
AT2G45670			calcineurin B subunit-related ...		Lus10041384 [exp]	17.3	0.9013
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021103 [exp]	19.1	0.9028
AT1G12640			MBOAT (membrane bound O-acyl t...		Lus10029595 [exp]	19.5	0.8879

Compare expression of checked genes

Lus10035134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.