Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01240 362 / 2e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G05390 332 / 3e-109 unknown protein AT3G27230 236 / 6e-73 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G40830 233 / 1e-71 ATRAD3, ATATR S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G29790 214 / 5e-65 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G23300 42 / 0.001 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031968 [exp] 769 / 0 AT4G01240 372 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10010138 [exp] 361 / 1e-120 AT4G01240 620 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10029907 [exp] 335 / 2e-110 AT3G05390 697 / 0.0 unknown protein Lus10004494 [exp] 333 / 5e-110 AT3G05390 699 / 0.0 unknown protein Lus10020803 [exp] 260 / 3e-82 AT5G40830 282 / 1e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10007385 [exp] 252 / 6e-79 AT5G40830 277 / 1e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10034506 [exp] 231 / 8e-71 AT3G27230 599 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024318 [exp] 226 / 3e-69 AT3G27230 581 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033164 [exp] 226 / 2e-67 AT3G27230 451 / 3e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G116900 [exp] 527 / 0 AT4G01240 388 / 7e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G165300 [exp] 353 / 1e-117 AT4G01240 662 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.013G019400 [exp] 331 / 4e-109 AT3G05390 753 / 0.0 unknown protein Potri.017G135100 [exp] 271 / 1e-86 AT3G05390 278 / 3e-89 unknown protein Potri.004G083800 [exp] 269 / 2e-85 AT3G05390 278 / 3e-89 unknown protein Potri.004G231100 [exp] 261 / 6e-82 AT3G05390 287 / 2e-92 unknown protein Potri.005G236600 [exp] 242 / 5e-75 AT3G27230 634 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G024800 [exp] 234 / 7e-72 AT3G27230 600 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G352700 [exp] 211 / 7e-64 AT1G29790 437 / 2e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.011G079000 [exp] 198 / 1e-58 AT1G29790 439 / 2e-154 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10035135 pacid=23162587 polypeptide=Lus10035135 locus=Lus10035135.g ID=Lus10035135.BGIv1.0 annot-version=v1.0 ATGCAGAAACAAAGCAACTCAAGATCATGGAAATGCTTCCCTGGAGGAGGAAGAAGAACAACTCTGGCAATGCTATGCCCTCTCTTTCTTCTTTCCACCT TCACAATCCTCATTCTTATGAGCTCCAACATCTCTTATTACCCTTCTCAGTATTTCCACATTCAGAAAGATGTCTGCAGCCTTACTCAAATCCATACTCA AATCTTCACCTTGCAGGCTCAACTGGGCTCATTGCTACAACAGCTGCATACTCATCATGACAGTACTACTCTTCCAGGAAATCTGTCGAATTTTTCTGAT CAACTTCTTCACTTGGCAGTTTCTCTTGACAAGATTGCAGGCAGCCTTTCAAATTCACCTACTGACAGTACTAGTAGTGAAACGAGCCAAGTCGACGAGG ATTTCAGCGAGCCAGAGGAATATGGCGATGAGAACGAAGAGGGATCGATAGGTGTAAAGGGTTTTGCTTCAGGTGGTGAGGTTTACAGCTACATATCACC AAAGTCAAACAGGGAAAAGGGCAAGAAGAATTTTCTTGGAGTTGAAGCAATTAGTCCTGCGATAGGGTTTGGCTGTACTCGCATGGCTGCACATTTAGAG CATTTCATGAAGTACAAGAAGTTTGGGATGTGTCCAGATGATTGGGATGTTGCTCAAAGGTTGATGATCAACGGCTGTGATTCACTTCCAAGGAGGAAGT GTTTCTCAAGAGCACCTCCAAATTACGGTACGAATCCGCCATTTTCAAACTTCTCGTCTCTTTGGACTCAGCCGAGTGATGGTAACATCCTCTGGAATCG TTACAAATGCAAAAGTTATACGTGTCTTGTTTCGCAAGATTCTATGGACAAGAGAGGGTTCTTCAAATGTGGAGATTGTTTCAACCTCACGAAAAGAGCG TGGGTGGATGTAACAACAACGAATTACTCAGCTGAGTTCACGATCGATCAAGTTCTGGGACTGAGACCGGGTGAGATTCGAATAGGGCTCGACTTCAGCC CCACAACCGGCACATTCGCTGCGATGATGAAGGAGAGAGGCGTGACGATTGCTTCAGCTACACTCAACTTGGGTGCACCTTTCAATGAGGTGATTGCACT GAGAGGTCTCTTGCCTCTTTATATATCTGTGGGGACAAGGCTGCCGGTGTTCGACAACACACTCGACATCATTCATTCTACGCTGTTCTTGGACGGGTGG ATAGGCGTGGAACTGCTTCAGTTCGTGTTGTTTGATTGGGATCGAGTTCTTCGCCCCAATGGGCTCCTGTGGGTTGATAGATTCTTCTGCAAGAAAGACG ACATGAAGATGTACTTGGATGAATTTGAAAGGCTTGGGTACAAAAAGCTGCTATGGAGAGTTGTGTCCAAGACAGATAAACTAGGAGATGAACTTTTTCT CTCTGCTGTTCTGGAAAAGCCCACGAGGAAATATAGAATCTCGTAA
AA sequence Show only first row Show all	>Lus10035135 pacid=23162587 polypeptide=Lus10035135 locus=Lus10035135.g ID=Lus10035135.BGIv1.0 annot-version=v1.0 MQKQSNSRSWKCFPGGGRRTTLAMLCPLFLLSTFTILILMSSNISYYPSQYFHIQKDVCSLTQIHTQIFTLQAQLGSLLQQLHTHHDSTTLPGNLSNFSD QLLHLAVSLDKIAGSLSNSPTDSTSSETSQVDEDFSEPEEYGDENEEGSIGVKGFASGGEVYSYISPKSNREKGKKNFLGVEAISPAIGFGCTRMAAHLE HFMKYKKFGMCPDDWDVAQRLMINGCDSLPRRKCFSRAPPNYGTNPPFSNFSSLWTQPSDGNILWNRYKCKSYTCLVSQDSMDKRGFFKCGDCFNLTKRA WVDVTTTNYSAEFTIDQVLGLRPGEIRIGLDFSPTTGTFAAMMKERGVTIASATLNLGAPFNEVIALRGLLPLYISVGTRLPVFDNTLDIIHSTLFLDGW IGVELLQFVLFDWDRVLRPNGLLWVDRFFCKKDDMKMYLDEFERLGYKKLLWRVVSKTDKLGDELFLSAVLEKPTRKYRIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10035135 [exp]	0	1
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10025987 [exp]	1.7	0.9464
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004346 [exp]	4.6	0.9273
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	9.2	0.9280
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10037178 [exp]	10.6	0.9171
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10012239 [exp]	11.5	0.9236
AT3G07570			Cytochrome b561/ferric reducta...		Lus10016080 [exp]	11.5	0.9233
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10002885 [exp]	11.5	0.9055
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10001968 [exp]	13.7	0.9153
AT1G55270			Galactose oxidase/kelch repeat...		Lus10030072 [exp]	14.1	0.8905
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10029252 [exp]	15.0	0.9235

Compare expression of checked genes

Lus10035135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.