Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46570 780 / 0 BSK2 BR-signaling kinase 2 (.1) AT4G35230 620 / 0 BSK1 BR-signaling kinase 1 (.1) AT3G54030 603 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G59010 601 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT1G63500 590 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT4G00710 579 / 0 BSK3 BR-signaling kinase 3 (.1) AT5G41260 578 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G50990 512 / 4e-179 Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G01740 507 / 2e-177 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT3G09240 504 / 3e-176 Protein kinase protein with tetratricopeptide repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031967 [exp] 1024 / 0 AT5G46570 779 / 0.0 BR-signaling kinase 2 (.1) Lus10040719 [exp] 600 / 0 AT5G59010 820 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10027743 [exp] 591 / 0 AT3G54030 824 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10035550 [exp] 586 / 0 AT3G54030 817 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10008530 [exp] 584 / 0 AT1G63500 834 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10034573 [exp] 580 / 0 AT4G35230 778 / 0.0 BR-signaling kinase 1 (.1) Lus10008494 [exp] 580 / 0 AT1G63500 831 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10001998 [exp] 575 / 0 AT1G63500 811 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10016454 [exp] 566 / 0 AT5G59010 774 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G179300 [exp] 872 / 0 AT5G46570 814 / 0.0 BR-signaling kinase 2 (.1) Potri.003G088900 [exp] 775 / 0 AT5G46570 820 / 0.0 BR-signaling kinase 2 (.1) Potri.009G142800 [exp] 617 / 0 AT4G35230 890 / 0.0 BR-signaling kinase 1 (.1) Potri.004G182800 [exp] 617 / 0 AT4G35230 899 / 0.0 BR-signaling kinase 1 (.1) Potri.006G093900 [exp] 604 / 0 AT3G54030 844 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.009G039500 [exp] 603 / 0 AT5G59010 857 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.001G246400 [exp] 598 / 0 AT5G59010 868 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.014G082400 [exp] 597 / 0 AT4G00710 826 / 0.0 BR-signaling kinase 3 (.1) Potri.016G105800 [exp] 597 / 0 AT3G54030 835 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.002G011800 [exp] 595 / 0 AT4G35230 836 / 0.0 BR-signaling kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10035136 pacid=23162508 polypeptide=Lus10035136 locus=Lus10035136.g ID=Lus10035136.BGIv1.0 annot-version=v1.0 ATGGGTTGTTTTCACTCCAAAACTTCCCATTTGTTGTCTCCTGATAAACAGCAGGAGCCACTTCCACTTCCAGAAGATGCAAAGCCGCTCCCAACGTCTG AAGATTCATCCATTCCCACTCAACTTGACGTTCCCGTATTCCGTGAGTTCTCTCTTGTTGAGCTTCGCACGGCCACCAATGGTTTCAGCTCTGACTTGAT TGTTTCCGAGAGTGGTGAAAAGGCTCCCAATGTAGTCTATCGCGGGAAGTTGAAAGACAACCGCATGATTGCTGTTAAGCGGTTCTCTAAACTTTCGTGG CCTGATCCTCAACAGTTCCTGAGTGAAGCATCAATGGTTGGAAAAGTACGGCATATGAGATTGGTTAACTTAATTGGGTGTTGCGCCGAGGGTGATGAGC GCTTGCTGGTTGCTGAATATATGCCTAATGACACGCTCTCCAAACATCTCTTCCATTGGGATAAACAGCCATTGCCCTGGGAAATGCGTGTAAGAGTAGG GTACTACATTGCTCAAGTACTGGATCATTGCACCATCCAGGACCGCAAGATTTACCACGATTTGAATGCTTACAGAGTTCTTTTTGACGAGGAAGGTGAT CCTCGTTTGTCTAGTTTCGGCCTCATGAAGAATAGCAGAGATGGGAAGAGTTACAGTACAAACCTGGCTTATACACCGCCTGAATTTTTGCGGACAGGAA GGGTTATCCCTGAGAGTGTAATGTACAGCTATGGAACTGTTCTGCTGGATCTTTTGAGTGGAAAACATATCCCTCCAAGCCATGCACTGGATTTAATAAG GGGAGAAAACTTATCGTTGTTGATGGATTCGTCCTTGGAGGGGCAGTATGCAAATGAAGATGCTGCTCAATTGGTTGAACTGGCCTCTAAGTGTTTACAG TATGAGGCAAAGGATCGGCCTGAATTGAAATATCTTCTTACTGTAGTAGAACCCCTTCAGAAGCAGAAAGAGGTTTCATCTCTTTCGCTGATGGGCCTAT CACGAACTCCAGTGGCACTTCCTACCATGCTTTCCCCACTTGGGAAGGCTTGTATCAGAATGGATCTAGCAGCAGTACACGATGTCTTACTTAAGACAGG TTATAGAGAAGAAGAAGGAGCTGAAAATGAGTTGTCGTTTCAAGAATGGACGCAGCAAGTGCAAGACATGCTGAACACTAAAAAGTTTGGTGATATTGCT TTCCGAGACAAGGATTTTAAGAATGCCGTTGATTGCTATACAAAGCTGGTGTCAATGATGGCAGCTCCTTCTGGAACCGTGTTTGTTCGACGAGCATTAT CCTACTTAATGATCGGACAAGCAGAACTAGCCCTGAGAGATGCAATGCAGGCGCAAGTATGCATGCCGGAATGGCCAGCGGCATTCTACATGCAGGCGCT TGCACTGTCGAAGCTCGGAATGGAGAGCGATGCTCAGGACATGCTTAACGACGGAGCCAACCTAGAATCGAAGAAGCAGAACAGCTGGCGCCATGCGAGT TAA
AA sequence Show only first row Show all	>Lus10035136 pacid=23162508 polypeptide=Lus10035136 locus=Lus10035136.g ID=Lus10035136.BGIv1.0 annot-version=v1.0 MGCFHSKTSHLLSPDKQQEPLPLPEDAKPLPTSEDSSIPTQLDVPVFREFSLVELRTATNGFSSDLIVSESGEKAPNVVYRGKLKDNRMIAVKRFSKLSW PDPQQFLSEASMVGKVRHMRLVNLIGCCAEGDERLLVAEYMPNDTLSKHLFHWDKQPLPWEMRVRVGYYIAQVLDHCTIQDRKIYHDLNAYRVLFDEEGD PRLSSFGLMKNSRDGKSYSTNLAYTPPEFLRTGRVIPESVMYSYGTVLLDLLSGKHIPPSHALDLIRGENLSLLMDSSLEGQYANEDAAQLVELASKCLQ YEAKDRPELKYLLTVVEPLQKQKEVSSLSLMGLSRTPVALPTMLSPLGKACIRMDLAAVHDVLLKTGYREEEGAENELSFQEWTQQVQDMLNTKKFGDIA FRDKDFKNAVDCYTKLVSMMAAPSGTVFVRRALSYLMIGQAELALRDAMQAQVCMPEWPAAFYMQALALSKLGMESDAQDMLNDGANLESKKQNSWRHAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46570		BSK2	BR-signaling kinase 2 (.1)		Lus10035136 [exp]	0	1
AT1G53130		GRI	GRIM REAPER, Stigma-specific S...		Lus10041930 [exp]	1.4	0.9078
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Lus10011932 [exp]	6.3	0.9116
AT4G13330			S-adenosyl-L-methionine-depend...		Lus10014472 [exp]	9.4	0.8791
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Lus10011839 [exp]	14.7	0.9042
AT1G71980			Protease-associated (PA) RING/...		Lus10016936 [exp]	20.6	0.8330
AT5G58760		DDB2	damaged DNA binding 2 (.1)		Lus10036179 [exp]	21.9	0.8451
AT5G21105			Plant L-ascorbate oxidase (.1....		Lus10026753 [exp]	24.8	0.8799
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Lus10014330 [exp]	25.7	0.9019
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10016492 [exp]	27.7	0.8900
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10012157 [exp]	28.3	0.9019

Compare expression of checked genes

Lus10035136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.