Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29900 297 / 2e-99 PS2 Presenilin-2 (.1) AT1G08700 187 / 5e-56 PS1 Presenilin-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031966 [exp] 459 / 5e-163 AT2G29900 471 / 3e-166 Presenilin-2 (.1) Lus10020339 [exp] 184 / 4e-55 AT1G08700 531 / 0.0 Presenilin-1 (.1) Lus10009518 [exp] 176 / 9e-52 AT1G08700 538 / 0.0 Presenilin-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G058301 [exp] 296 / 2e-98 AT2G29900 431 / 1e-149 Presenilin-2 (.1) Potri.013G067700 [exp] 196 / 2e-59 AT1G08700 494 / 1e-173 Presenilin-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0130 [flax] [poplar] Peptidase_AD PF01080 [flax] [poplar] Presenilin Presenilin
Representative CDS sequence Show only first row Show all	>Lus10035137 pacid=23162496 polypeptide=Lus10035137 locus=Lus10035137.g ID=Lus10035137.BGIv1.0 annot-version=v1.0 ATGGTCCTCCTCTTCTACTTCAGATGCACTCATTTCCTCAAGTTCTACATGGCTTTCTCTTCCTTCACCGTCTTGCTCTTCCTCGGCGGCGTCATCGCGC TTTTCCTCATCAGGAAGTTCAGCTTCCCAATCGACTGTTTCACCTTTCTGGTAGTGCTGTACAATTTCTCCGCCGTGGGTGTTTTGGCCGTGTTCTTGTC GAAATTCGCCATTGTTGTTACTCAGGGTTATCTGGTTGTGATTGGGGTTTTGGTTGCTTATTGGTTCACTCTTCTCCCTGAATGGACCACTTGGACTCTG TTAGTTGCTCTGGCTTTGTATGATCTTGCAGCTGTTCTTTTGCCTGTCGGCCCCTTGAGATTACTCGTTGAGCTTGCAATCTCTAGGGATGAGGATATCC CTGCTTTGGTCTATGAGGCTCGCCCCGTAGTGGCTAACCATGATCAGGGCTCGACAATTGACAATGTAGGGGAAACAAGGGCTTGGAGGCAAAGGAGAAA CGCAGGAAATGGTTCGGATTCGAGCTTGATTATCACCGAAGAGGGGCGAGGTCTTACTGCGCCTTTGATTGAGAATAGGGATGGACAGGGAGGAGGAATT CTGTCAAGTGAAAGCTTTCTGGAAGGTATTGGACTGGGATCAAGTGGTGCTATAAAGCTGGGACTTGGGGACTTCATTTTCTACAGTGTGTTGGTTGGAA GAGCAGCTATGTATGATTTCATGACTGTGTATGCTTGCTACTTGGCTATCATAGCTGGTTTAGGTGTTACGTTGATGCTGCTGGCGTTGTATCAGCAAGC TTTACCGGCCCTTCCTGTGTCAATTGCTCTAGGAGTGTTGTTTTATTTCCTGACAAGGCTCCTACTTGAAGAATTCGTGGTGCAGTGTTCTCTGAACCTT GTAATGTTTTAG
AA sequence Show only first row Show all	>Lus10035137 pacid=23162496 polypeptide=Lus10035137 locus=Lus10035137.g ID=Lus10035137.BGIv1.0 annot-version=v1.0 MVLLFYFRCTHFLKFYMAFSSFTVLLFLGGVIALFLIRKFSFPIDCFTFLVVLYNFSAVGVLAVFLSKFAIVVTQGYLVVIGVLVAYWFTLLPEWTTWTL LVALALYDLAAVLLPVGPLRLLVELAISRDEDIPALVYEARPVVANHDQGSTIDNVGETRAWRQRRNAGNGSDSSLIITEEGRGLTAPLIENRDGQGGGI LSSESFLEGIGLGSSGAIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGVTLMLLALYQQALPALPVSIALGVLFYFLTRLLLEEFVVQCSLNL VMF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29900		PS2	Presenilin-2 (.1)		Lus10035137 [exp]	0	1
AT5G10730			NAD(P)-binding Rossmann-fold s...		Lus10020108 [exp]	2.8	0.8793
AT3G09350		Fes1A	Fes1A (.1.2.3)		Lus10003961 [exp]	5.2	0.8721
AT5G16420			Pentatricopeptide repeat (PPR-...		Lus10030223 [exp]	8.1	0.8412
AT1G66080			unknown protein		Lus10031356 [exp]	9.2	0.8766
AT3G17880		ATHIP2, ATTDX	HSC-70 INTERACTING PROTEIN, AR...		Lus10031334 [exp]	9.6	0.8687
AT1G08700		PS1	Presenilin-1 (.1)		Lus10020339 [exp]	13.7	0.8487
AT1G08700		PS1	Presenilin-1 (.1)		Lus10009518 [exp]	14.4	0.8356
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10009677 [exp]	15.9	0.8612
AT2G39020			Acyl-CoA N-acyltransferases (N...		Lus10023533 [exp]	16.3	0.8659
AT1G69680			Mog1/PsbP/DUF1795-like photosy...		Lus10012837 [exp]	20.7	0.7888

Compare expression of checked genes

Lus10035137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.