Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68400 663 / 0 leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G48480 380 / 9e-123 RKL1 receptor-like kinase 1 (.1) AT3G08680 370 / 1e-118 Leucine-rich repeat protein kinase family protein (.1.2) AT3G17840 365 / 1e-116 RLK902 receptor-like kinase 902 (.1) AT3G02880 357 / 4e-114 Leucine-rich repeat protein kinase family protein (.1) AT2G36570 343 / 3e-108 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 323 / 1e-100 Leucine-rich repeat protein kinase family protein (.1) AT1G10850 316 / 5e-98 Leucine-rich repeat protein kinase family protein (.1) AT4G23740 315 / 6e-98 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 300 / 3e-92 Leucine-rich repeat protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031965 [exp] 945 / 0 AT1G68400 614 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10017178 [exp] 353 / 9e-112 AT2G36570 872 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021131 [exp] 343 / 6e-108 AT2G36570 851 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10039321 [exp] 337 / 2e-106 AT4G23740 649 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002299 [exp] 318 / 5e-103 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1) Lus10017756 [exp] 326 / 1e-101 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029005 [exp] 319 / 2e-98 AT5G58300 612 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 317 / 2e-98 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10004040 [exp] 317 / 2e-98 AT1G48480 694 / 0.0 receptor-like kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G121700 [exp] 736 / 0 AT1G68400 760 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.006G117200 [exp] 404 / 2e-131 AT2G36570 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G035500 [exp] 400 / 3e-130 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1) Potri.019G131500 [exp] 397 / 2e-129 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 386 / 4e-125 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.006G228400 [exp] 382 / 2e-123 AT1G68400 357 / 3e-114 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.019G062100 [exp] 383 / 4e-123 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 375 / 5e-121 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 324 / 3e-101 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 317 / 6e-99 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10035138 pacid=23162421 polypeptide=Lus10035138 locus=Lus10035138.g ID=Lus10035138.BGIv1.0 annot-version=v1.0 ATGGCGGCTAAACACCCTTCCCAGCTCTCACATTTCTCTCTCCCTCTCTTCCTCCTCCTAAACCTCACCCTCACCCTCACTTTCGCCTTAACCCTCGATC ACCCAGATTTACACCCGCTCATGAACTTCAAATCATCCGCCGACCCATTCAACCGCCTCTCCGGCTGGAACTACTCCGCCGCCGCCGACCTCTGCAATTG GACCGGAGTTTCCTGCTCCCAAAACAGAGTCTCCCGTCTAGTACTCGAAAACCTCGACCTCAACGGCTCTTTTATCGAACCCTTGACTTCCCTCGCCCAC CTCCGAGTCCTAAGCCTCAAATCAAACTCCCTCACAGGTCCCATCCCTCACTCTTTCTCCAACCTCACTTCCTTAAAACTCCTCTTCCTCTCCCGCAACC GCTTCTCCGGCGAGTTCCCTCCGTCTCTCCTCTCACTCCGCCGTCTCTTCCGCCTGGATCTCTCTAGTAACAACTTCTCCGGTCCCATCCCGTCCACAAA CCATTTGACTCATCTGTTGACTCTCCGACTCGAGGACAACAATTTCTCCGGTTTAATCTCCAATTTAGACCTCCCTCTCAGTATCCAGGATTTCAACGTC TCCGGAAACCGCCTCTCCGGCGAGATCCCCAAATCTCTTTCCGGTTTCCCCGTTTCGTCCTTCTCCGGCAACACAGCTCTCTGCGGAGGACCGTTGGGTA CAAAATGCCAAGGAATCGGACCGGGTGGGTCGGGTTCGTCGGACCCGACCCGGCCAGGAGGTGTAGAGATTGCATCTCCGGTCACGCCGGGGGTGGTAGT ATCTTCATCCCCGAGCTCGTTGCCGACGGGGACCTCGCCTAAGAAGCCGGCGGCGGCGAACAGCGGCGGCGAGAAGTCGAGTGCGGCGGCGAAGATAAGT CCGGTGGCGTTAATCGCCATCATTCTGGGCGACGTGCTGATACTGGCGGTGGTTTCTATGCTGCTATACTGCTACTTCTGGAGGAACTACGCGGCTAAGC TGGTGATGATGAGGAAAGGAGGAGGGAAGCTGTCGACGACGACGATGGAGACGGAGAAAATCGTGTACTCGTCGAGCCCGTACCCGGATCCGGCCCGAAT GCAGACCCTCGGAGGGAGGGGGATGACGGCGATGGTGTTCTTCGAAGGGGCGAAGAGGTTCGAGCTGGAGGATCTGTTGAGAGCTTCGGCGGAGATGCTG GGGAAAGGCGGGTTCGGGACCGCGTACAAGGCGGTCCTCGACGACGGCAATGTGGTGGCGGTGAAGCGGCTGAAGGATGCGAACATAGTCTCCGGCGTCG GAGGCGTCGGAGGCGGCGGAGTGGGCGGGAAGTTGGAGCAACATATGGAGATATTGGGGAGGTTGAGGCATCCGAATTTGGTGAGCTTGAAAGCTTACTA TTTCGCACGGGAAGAGAAGCTTCTTGTTTATGATTACATGCCCAACGGCAGCCTCTTCTGGCTTCTTCACGGAAACCGTGGACCAGGAAGAACCCCACTT GACTGGAACACAAGGCTGAAGATAGCAGCAGGAGCAGCTCGAGGCCTAGCATTCATCCACTCATCCTGCTCATCCCTCAAGCTCATCCACGGCAACATCA AGTCAACCAACATCCTCCTCGACCAATCGGCCAACGCTCGAGTCTCCGATTTCGGCCTATCACTATTCGCCGCCTCATCATCCAGCAGCAACGGCTACCG CGCTCCGGAATCCAACGTCTCGAAACTGACTCAGAAATCGGACGTCTACTCGTTCGGAGTGTTGCTCCTGGAAATGCTGACCGGGAAGTGCCCCAACTCG GTGTCTGGTGATCATTACGGCGGAGGTGGTGGTGGAGGTGGGGCGGTTGACTTGCCGAGGTGGGTGCAGAGTGTGGTGAGGGAGGAGTGGACGGCGGAGG TGTTTGATTTGGAGCTGATGAGGTATAAGGATATAGAAGAGGAGATGGTGGGGCTGTTGCAGATAGCAATGGTGTGTAGTTCGCCGGCCCCCGATCAGAG GCCGAAGATGGGACAGGTTGTGAAGATGATTGAGGAGTTGAGAGGCGTTGCTGTTGGTCATCAGGTGTCTCCCGGTGGTCATGAGTCTGTGTCGGATTCT CCTTCTATGTCGGAAGATACCGCCACCAGTCAGTAA
AA sequence Show only first row Show all	>Lus10035138 pacid=23162421 polypeptide=Lus10035138 locus=Lus10035138.g ID=Lus10035138.BGIv1.0 annot-version=v1.0 MAAKHPSQLSHFSLPLFLLLNLTLTLTFALTLDHPDLHPLMNFKSSADPFNRLSGWNYSAAADLCNWTGVSCSQNRVSRLVLENLDLNGSFIEPLTSLAH LRVLSLKSNSLTGPIPHSFSNLTSLKLLFLSRNRFSGEFPPSLLSLRRLFRLDLSSNNFSGPIPSTNHLTHLLTLRLEDNNFSGLISNLDLPLSIQDFNV SGNRLSGEIPKSLSGFPVSSFSGNTALCGGPLGTKCQGIGPGGSGSSDPTRPGGVEIASPVTPGVVVSSSPSSLPTGTSPKKPAAANSGGEKSSAAAKIS PVALIAIILGDVLILAVVSMLLYCYFWRNYAAKLVMMRKGGGKLSTTTMETEKIVYSSSPYPDPARMQTLGGRGMTAMVFFEGAKRFELEDLLRASAEML GKGGFGTAYKAVLDDGNVVAVKRLKDANIVSGVGGVGGGGVGGKLEQHMEILGRLRHPNLVSLKAYYFAREEKLLVYDYMPNGSLFWLLHGNRGPGRTPL DWNTRLKIAAGAARGLAFIHSSCSSLKLIHGNIKSTNILLDQSANARVSDFGLSLFAASSSSSNGYRAPESNVSKLTQKSDVYSFGVLLLEMLTGKCPNS VSGDHYGGGGGGGGAVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMVCSSPAPDQRPKMGQVVKMIEELRGVAVGHQVSPGGHESVSDS PSMSEDTATSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68400			leucine-rich repeat transmembr...		Lus10035138 [exp]	0	1
AT1G68400			leucine-rich repeat transmembr...		Lus10031965 [exp]	1.4	0.9561
AT1G73620			Pathogenesis-related thaumatin...		Lus10009058 [exp]	3.0	0.9565
AT3G18800			unknown protein		Lus10020872 [exp]	3.5	0.9471
AT4G38210		ATHEXPALPHA1.23...	EXPANSIN 20, expansin A20 (.1)		Lus10013849 [exp]	3.9	0.9478
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10034881 [exp]	4.0	0.9431
AT3G18800			unknown protein		Lus10033505 [exp]	6.0	0.9300
AT5G15210	ZF_HD	ATHB30, ZFHD3, ...	ZINC FINGER HOMEODOMAIN 8, ZIN...		Lus10036753 [exp]	7.4	0.9305
AT1G61170			unknown protein		Lus10018461 [exp]	7.9	0.9181
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10041347 [exp]	8.1	0.9527
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10017292 [exp]	12.5	0.9510

Compare expression of checked genes

Lus10035138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.