Plant FIBer expression Database

Lus10035139 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G16676 42 / 7e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014248
[exp]
74 / 3e-16 ND /
Lus10020135
[exp]
74 / 4e-16 ND /
Lus10033213
[exp]
57 / 2e-09 AT1G57720 600 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2)
Lus10019378
[exp]
47 / 9e-07 ND /
Lus10038707
[exp]
47 / 2e-06 ND 42 / 4e-04
Lus10016642
[exp]
41 / 0.0001 ND 38 / 8e-04
Lus10010788
[exp]
39 / 0.0009 AT5G36228 42 / 1e-04 nucleic acid binding;zinc ion binding (.1)
Lus10022598
[exp]
0 / 1 ND 36 / 0.006
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10035139 pacid=23162386 polypeptide=Lus10035139 locus=Lus10035139.g ID=Lus10035139.BGIv1.0 annot-version=v1.0
ATGAAGCTTTGGGTGCGTCTCGAGCGAGTGTCGGATCATCTGGGTACGCCGACCTTCGCCTCCGGTCTCTTGGGTCTTCTTGGTGAGGTCATCGATGTGG
GCCTCTACTCCTCTGCTGAGGAATCTGGCTATTTCTTACGGGGAGTTGTCCGCTCTGATGTTCGGGATTCCTTTGCTGGTCGTTGCCGTGCACGATCTGA
GGAGGGTACGGATTTTTGGGTGCGCCTTCGATGTGAGGGACTCCCGGTGATTTGTTTCCATTGTGGCGCTTTAGGCCACCATTTCAATCAGTGTCCGGTG
GAAGGGCATCATCCGATTGATCTTGAAAACCGTGGTTCCTGGATGAGTTTTCCGACGGGATCCTACAAGAAAGTGAACCCTTTCACTCTGCAATGTGAAT
CGAGGACTGCGACGGTGAACTCGCTGCCTAGTCTCGCTCCTAAGCCTCATGGGGCTGGTGCCTCCGCCACGTCTCGATGTCGCAAGCGACAGAGCTGGCT
GGCGCACGGGGATCTACCGTCTTCCTCGCGTCTAGTGCCCGCCGTCGAGTAG
AA sequence
>Lus10035139 pacid=23162386 polypeptide=Lus10035139 locus=Lus10035139.g ID=Lus10035139.BGIv1.0 annot-version=v1.0
MKLWVRLERVSDHLGTPTFASGLLGLLGEVIDVGLYSSAEESGYFLRGVVRSDVRDSFAGRCRARSEEGTDFWVRLRCEGLPVICFHCGALGHHFNQCPV
EGHHPIDLENRGSWMSFPTGSYKKVNPFTLQCESRTATVNSLPSLAPKPHGAGASATSRCRKRQSWLAHGDLPSSSRLVPAVE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G16676 unknown protein Lus10035139
[exp]
0 1
AT1G67230 CRWN1, LINC1 CROWDED NUCLEI 1, little nucle... Lus10003075
[exp]
3.5 0.8397
AT1G79020 Enhancer of polycomb-like tran... Lus10034778
[exp]
3.7 0.8610
AT4G15900 PRL1 pleiotropic regulatory locus 1... Lus10037500
[exp]
7.1 0.8252
AT5G12410 THUMP domain-containing protei... Lus10005018
[exp]
10.6 0.8247
AT4G36650 ATPBRP plant-specific TFIIB-related p... Lus10024022
[exp]
12.8 0.7956
AT5G05940 ATROPGEF5, ROPG... ROP guanine nucleotide exchang... Lus10000399
[exp]
13.0 0.7679
AT3G18035 HON4 winged-helix DNA-binding trans... Lus10024594
[exp]
13.0 0.7898
AT3G27260 GTE8 global transcription factor gr... Lus10014609
[exp]
14.0 0.8162
AT3G13670 Protein kinase family protein ... Lus10042455
[exp]
19.4 0.7868
AT2G34670 Protein of unknown function (D... Lus10036155
[exp]
20.7 0.7957

Lus10035139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.