Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15680 523 / 2e-171 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031961 [exp] 560 / 0 AT5G15680 2930 / 0.0 ARM repeat superfamily protein (.1) Lus10019255 [exp] 524 / 9e-172 AT5G15680 3488 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G106100 [exp] 474 / 8e-154 AT5G15680 3580 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035142 pacid=23162503 polypeptide=Lus10035142 locus=Lus10035142.g ID=Lus10035142.BGIv1.0 annot-version=v1.0 ATGAAAGCAGGAAGTGCCACGAAGCTGATTGTTGATGCGCTGCTACAGCGGTTTCTTCCCCTTGCTAGGCGCCGCATCGAAACGGCTCAAGCTCAGGATG GACAGTACCTTCGACCATCAGACCCTGCTTATGAGCAGGTGCTGGATTCCCTAGCTATGATTGCACGGCATACTCCAGTTCCTCTCTTAGAAGCTCTTCT TAGATGGCGAGAGAGCGAATCTCCAAAAGGGGCTAATGATGCATCTACTTTCCAGAGAAAGCTAGCGGTGGAGTGTATTTTCTGCTCAGCGTGTATCCGG TTTGTGGAGTGCTGCCCACAGGAGGGACTAACCGAGAAACTGTGGTCTGGGCTTGAGAATTTTGTATTTGATTGGTTAATTAATGCTGACAGAGTTGTTA GTCAGGTTGAATATCCCTCATTGGTTGATTTGCGAGGGCTCCTCTTGGATTTAGTTGCTCAGCTCCTTGGAGCCTTGTCTCGTATCAGGTTTAGTTCAGT AACTGAGCGCTTTTTCATGGAGCTAAATACACGTCGCATAGACACTAGTGTTGCCCGAAGTGAAACACTCAGTATTATCAACGGGATGCGATACTTAAAG CTTGGGGTGAAGACTGAGGGGGGCCTTAATGCATCAGCTTCTTTTGTGGCCAAAGCAAATCCATTGAATCGTTCTCCACACAAGCGCAAAAGTGAGCTCT ACCACGCACTCTGTAATATGCTCTCAAACATTCTAGCTCCATTGGCAGATGGTGCAAGAAACCAATGGCCTCCATCAGGTGTAGACAATGCTCTTACGCT GTGGTATGAGGCTGTTGGTCGAATAAGGATGCAACTTATACATTGGATGGACAAACAAAGCAAGCACATAGCTGTAAGTGCATCTTAG
AA sequence Show only first row Show all	>Lus10035142 pacid=23162503 polypeptide=Lus10035142 locus=Lus10035142.g ID=Lus10035142.BGIv1.0 annot-version=v1.0 MKAGSATKLIVDALLQRFLPLARRRIETAQAQDGQYLRPSDPAYEQVLDSLAMIARHTPVPLLEALLRWRESESPKGANDASTFQRKLAVECIFCSACIR FVECCPQEGLTEKLWSGLENFVFDWLINADRVVSQVEYPSLVDLRGLLLDLVAQLLGALSRIRFSSVTERFFMELNTRRIDTSVARSETLSIINGMRYLK LGVKTEGGLNASASFVAKANPLNRSPHKRKSELYHALCNMLSNILAPLADGARNQWPPSGVDNALTLWYEAVGRIRMQLIHWMDKQSKHIAVSAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15680			ARM repeat superfamily protein...		Lus10035142 [exp]	0	1
AT1G58230			binding (.1)		Lus10042867 [exp]	2.8	0.9735
AT1G17450			B-block binding subunit of TFI...		Lus10000374 [exp]	3.3	0.9650
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Lus10033980 [exp]	3.7	0.9711
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10002605 [exp]	5.2	0.9703
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10027841 [exp]	5.3	0.9614
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10009712 [exp]	6.0	0.9685
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Lus10009601 [exp]	6.3	0.9652
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10011135 [exp]	8.0	0.9598
AT1G24300			GYF domain-containing protein ...		Lus10035191 [exp]	8.1	0.9648
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10035973 [exp]	8.1	0.9691

Compare expression of checked genes

Lus10035142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.