Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68260 240 / 6e-81 Thioesterase superfamily protein (.1) AT1G68280 224 / 8e-75 Thioesterase superfamily protein (.1) AT1G35290 211 / 1e-69 Thioesterase superfamily protein (.1) AT1G35250 207 / 4e-68 Thioesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031959 [exp] 286 / 1e-99 AT1G68260 221 / 5e-75 Thioesterase superfamily protein (.1) Lus10031948 [exp] 259 / 3e-88 AT1G68260 201 / 8e-66 Thioesterase superfamily protein (.1) Lus10035152 [exp] 247 / 3e-83 AT1G68260 200 / 3e-65 Thioesterase superfamily protein (.1) Lus10031936 [exp] 120 / 5e-35 AT1G68260 50 / 2e-08 Thioesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G123102 [exp] 248 / 1e-83 AT1G68260 237 / 6e-80 Thioesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF03061 [flax] [poplar] 4HBT Thioesterase superfamily
Representative CDS sequence Show only first row Show all	>Lus10035143 pacid=23162552 polypeptide=Lus10035143 locus=Lus10035143.g ID=Lus10035143.BGIv1.0 annot-version=v1.0 ATGTTGCCGCAAGGAGGATTGATTCCTAATTCCGCCGCGAAACTACAGCCGCCGATGCTTCGAACCTGCACGAAATCGTGGCCTCGCCTCCACCTTCCGC CGCCGCCGTCCACGACGCTCCGGCGACAGCTCCATCCGCCATCACATCTGCAATCGTCACCTTCCTGGAGCCGACGAGGAAGCACCGCCACCTCCGCACT TTTTGATATCAAAGGTGGAACACGGATGACCGGGTTCCATGACATCGAAATGAAAGTACGAGACTACGAGCTTGATCAATATGGAGTTGTCAACAATGCT GTTTACGCCAGTTACTGTCAACATGGTCGTCATGAACTTCTAGAGAGCATTGGTCTTAGTGCAGATGCTGTTGCTCGCACAGGTGACGCGTTGGCACTGT CGGAGTTATCCCTCAAATTTCTTGCCCCTCTCAGAAGTGGAGACAGGTTTACTGTAAGAGTGCGACTCTCCGACTCTTCTGCTGCCCGCTTATACTTTGA GCATTTCATCTTCAAGTTGCCAAACGACGAGCCTGTTCTGGAAGCAAAAGCTACAGCTGTATGGCTTGACAAAAACTATCGTCCAGTTCGAATCCCTGCA GATTTTAGGTCCAAACTAGTTCAGTTTATCCGTCACGAGGACTCTAATTCAAGTGCTGCACAACTGATCAACCAGTAG
AA sequence Show only first row Show all	>Lus10035143 pacid=23162552 polypeptide=Lus10035143 locus=Lus10035143.g ID=Lus10035143.BGIv1.0 annot-version=v1.0 MLPQGGLIPNSAAKLQPPMLRTCTKSWPRLHLPPPPSTTLRRQLHPPSHLQSSPSWSRRGSTATSALFDIKGGTRMTGFHDIEMKVRDYELDQYGVVNNA VYASYCQHGRHELLESIGLSADAVARTGDALALSELSLKFLAPLRSGDRFTVRVRLSDSSAARLYFEHFIFKLPNDEPVLEAKATAVWLDKNYRPVRIPA DFRSKLVQFIRHEDSNSSAAQLINQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68260			Thioesterase superfamily prote...		Lus10035143 [exp]	0	1
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10001419 [exp]	2.0	0.9182
AT5G66450			Phosphatidic acid phosphatase ...		Lus10041774 [exp]	2.0	0.8919
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10001416 [exp]	3.5	0.8844
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10034005 [exp]	6.3	0.8848
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10020468 [exp]	6.8	0.8587
AT4G37820			unknown protein		Lus10011571 [exp]	8.1	0.8846
AT3G59110			Protein kinase superfamily pro...		Lus10001055 [exp]	8.3	0.8878
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10034829 [exp]	8.4	0.8842
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10000513 [exp]	9.4	0.8418
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10009564 [exp]	9.9	0.8789

Compare expression of checked genes

Lus10035143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.