Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25370 69 / 7e-14 Protein of unknown function (DUF1639) (.1) AT3G18295 60 / 7e-11 Protein of unknown function (DUF1639) (.1) AT3G60410 54 / 3e-08 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) AT1G68340 53 / 3e-08 Protein of unknown function (DUF1639) (.1) AT1G48770 45 / 8e-06 Protein of unknown function (DUF1639) (.1) AT1G55340 40 / 0.0004 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT3G03880 40 / 0.0006 Protein of unknown function (DUF1639) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021808 [exp] 52 / 2e-08 ND / Lus10027232 [exp] 51 / 3e-08 AT1G68340 75 / 3e-17 Protein of unknown function (DUF1639) (.1) Lus10038942 [exp] 50 / 3e-08 AT1G25370 72 / 7e-17 Protein of unknown function (DUF1639) (.1) Lus10010984 [exp] 47 / 6e-06 AT3G60410 89 / 3e-20 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Lus10010312 [exp] 43 / 7e-05 AT1G55340 254 / 1e-86 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10004378 [exp] 42 / 0.0002 AT4G17440 96 / 4e-23 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10010650 [exp] 39 / 0.0006 AT1G55340 148 / 3e-46 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G122700 [exp] 82 / 3e-18 AT1G25370 110 / 1e-28 Protein of unknown function (DUF1639) (.1) Potri.008G122600 [exp] 76 / 3e-16 AT1G25370 100 / 6e-25 Protein of unknown function (DUF1639) (.1) Potri.012G055200 [exp] 61 / 3e-11 AT3G18295 109 / 3e-29 Protein of unknown function (DUF1639) (.1) Potri.014G044800 [exp] 47 / 3e-06 AT3G60410 105 / 6e-26 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Potri.002G136200 [exp] 46 / 8e-06 AT3G60410 109 / 6e-28 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Potri.013G057600 [exp] 41 / 0.0003 AT1G55340 212 / 1e-69 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07797 [flax] [poplar] DUF1639 Protein of unknown function (DUF1639)
Representative CDS sequence Show only first row Show all	>Lus10035144 pacid=23162374 polypeptide=Lus10035144 locus=Lus10035144.g ID=Lus10035144.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCGATGAGGACGGAGAGATCGAAACCGCCGCTCCACAATTTACCCCCCCCGCTCCACAATTTCAATCTCCCGTGCTTGAAATGGGGCACTC AGAGGCAACTCCGCTGTATGAAGGTTTCCGATTCGACCCACAGCACCAGCAACAAACCCAGGAACGGAGGAATCTCGTTCTCGGCGCCGGATCGTCACCA CCGGAGCAACCGATCTCCTCCCTCGAAATTCGCCGCCGCCGCTTCCAGGGATTGCGACGCTCGTCCTCATCATCATCCCCACCAATTCAAGAAACCGAAT CCGGTGGTTGGCGAGAGAGAGAGGCGAGGGGCTCCCGCGGCGCCCCCGGCTGCGCCGATCGGCCTAAGTCCGGCCGCCGGAAAGGGATTGAAGATTGAAG ATCGGAAAGAGAGCAGCAGCTCTCCGATTAGGAGCAAGAGGGAAAGAGATGAAGAAGAGGATGAGAAGCAGCCGGTGAAGAAGAGGGCTAAGTTCTCGGT GAGTCTGTCGAAGAAGGAGATCGAAAACGATTTCATGGCGATGGTCGGTCATCGACCTGCTCGGCGACCTAAGAAGCGGCCAAGAATCGTGCAGAAGCAG ATGGATGCTCTCTCTATTGGGTTTTGGCTAGGGGAAGTTAACCTTGATACATACAAGGTGCCGGAGGAGGTTGCCGATACCGGAAAGGTAAATTGCTGA
AA sequence Show only first row Show all	>Lus10035144 pacid=23162374 polypeptide=Lus10035144 locus=Lus10035144.g ID=Lus10035144.BGIv1.0 annot-version=v1.0 MAAAMRTERSKPPLHNLPPPLHNFNLPCLKWGTQRQLRCMKVSDSTHSTSNKPRNGGISFSAPDRHHRSNRSPPSKFAAAASRDCDARPHHHPHQFKKPN PVVGERERRGAPAAPPAAPIGLSPAAGKGLKIEDRKESSSSPIRSKRERDEEEDEKQPVKKRAKFSVSLSKKEIENDFMAMVGHRPARRPKKRPRIVQKQ MDALSIGFWLGEVNLDTYKVPEEVADTGKVNC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25370			Protein of unknown function (D...		Lus10035144 [exp]	0	1
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10033702 [exp]	2.0	0.9347
AT5G67540			Arabinanase/levansucrase/inver...		Lus10011543 [exp]	4.9	0.9194
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10005051 [exp]	5.0	0.9198
AT5G12300			Calcium-dependent lipid-bindin...		Lus10036036 [exp]	7.7	0.9174
AT4G25670			unknown protein		Lus10014961 [exp]	8.4	0.9189
AT5G66120			3-dehydroquinate synthase, put...		Lus10028429 [exp]	8.5	0.9380
AT1G76180		ERD14	EARLY RESPONSE TO DEHYDRATION ...		Lus10021240 [exp]	13.4	0.8798
AT5G58000			Reticulon family protein (.1)		Lus10035829 [exp]	13.6	0.8997
AT4G27350			Protein of unknown function (D...		Lus10038565 [exp]	14.0	0.9201
AT1G17620			Late embryogenesis abundant (L...		Lus10015622 [exp]	16.3	0.9305

Compare expression of checked genes

Lus10035144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.