Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68390 368 / 3e-127 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G11730 300 / 1e-100 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 291 / 6e-97 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G68380 290 / 1e-96 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 288 / 6e-96 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10280 288 / 9e-96 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25970 285 / 1e-94 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 274 / 4e-90 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10880 277 / 9e-89 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G16170 265 / 1e-86 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031958 [exp] 578 / 0 AT1G68390 403 / 2e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10034349 [exp] 483 / 6e-171 AT1G68390 387 / 3e-131 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036610 [exp] 336 / 6e-114 AT1G68390 404 / 3e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035828 [exp] 333 / 4e-113 AT1G68390 401 / 7e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10024468 [exp] 295 / 2e-98 AT1G10280 524 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10002989 [exp] 294 / 3e-98 AT1G10280 525 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 290 / 3e-96 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005504 [exp] 290 / 3e-96 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10007457 [exp] 289 / 4e-94 AT5G11730 489 / 1e-170 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G121800 [exp] 387 / 1e-134 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 348 / 2e-119 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 318 / 2e-107 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 308 / 2e-103 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 303 / 9e-102 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 300 / 1e-100 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 299 / 2e-100 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 293 / 5e-98 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 289 / 2e-96 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 285 / 2e-94 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10035145 pacid=23162553 polypeptide=Lus10035145 locus=Lus10035145.g ID=Lus10035145.BGIv1.0 annot-version=v1.0 ATGGAAGAAGAGGAGCTGCTATGGAGGGCGTCGATGGTGCCGAAATTAGAGAAGTACCCTTTTCCGAGGGTGCCGAAAGTGGCGTTTATGTTCCTGACGA AAGGTCCGATCCTTCTGCATCAGATATGGGAGATGTTCTTCAAAGGAGTGGACGAAGGGCTTTACTCCATCTACATCCATTCGAATCCTGCTTACGTGGA GCCGCCTGACGAGGGTCCCATCTTCCGCGGCCGTCGGATTCCCAGCAAGATAGTAACATGGGGGAAAGTAAACATGATGGAGGCCGAAAGACGGCTACTA GCAAACGCACTCCTAGACATCTCAAACCAACGATTCGTCCTCCTCTCCGAGTCATGCATCCCACTCTTCAACTTCTCAACGGTCTACTCTTACCTCATCA ACTCCCACCAGGTCTACGTGGAGGCCTACCATAACGTAGCGGCTCGAAACCGTTACACCCACGACATGCTGCCAGAGGTCAAGCTGTCCCACTGGCGGAA AGGTTCGCAGTGGTTCGAGATCGACAGAGAACTCGCGATCGAGGTGGTCTCGGACAGAATGTACTTCACAAAGTTCCAGGACCACTGCAAGGACATGCCC TGCTACGTGGACGAACACTACCTCCCGACCTACTTCAGCATCAAGCACTGGCGGAGGAACTCGAACCGGAGCCTGACGTGGGTGGACTGGTCCAACGGTG GGATCCACCCGAACCGGTACGTTAGGCAGGAGGTGACCGTGCAGTTTTTGGAGAAGTTGAGGAGTGGAGGGAGGTGTTTGTATAATGGGAAGAGTACGAG TACTTGTCATTTGTTTGGGAGGAAGTTTCTGACCACTTCTTTGGTTAGGCTGTTGAGATATGCCCCTAGGGTCATGCACTTCAATCCCTAA
AA sequence Show only first row Show all	>Lus10035145 pacid=23162553 polypeptide=Lus10035145 locus=Lus10035145.g ID=Lus10035145.BGIv1.0 annot-version=v1.0 MEEEELLWRASMVPKLEKYPFPRVPKVAFMFLTKGPILLHQIWEMFFKGVDEGLYSIYIHSNPAYVEPPDEGPIFRGRRIPSKIVTWGKVNMMEAERRLL ANALLDISNQRFVLLSESCIPLFNFSTVYSYLINSHQVYVEAYHNVAARNRYTHDMLPEVKLSHWRKGSQWFEIDRELAIEVVSDRMYFTKFQDHCKDMP CYVDEHYLPTYFSIKHWRRNSNRSLTWVDWSNGGIHPNRYVRQEVTVQFLEKLRSGGRCLYNGKSTSTCHLFGRKFLTTSLVRLLRYAPRVMHFNP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10035145 [exp]	0	1
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10023525 [exp]	7.3	0.8238
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10018936 [exp]	10.1	0.8417
					Lus10040811 [exp]	11.9	0.8600
AT1G61930			Protein of unknown function, D...		Lus10020047 [exp]	15.1	0.8491
AT5G43860		ATCLH2	ARABIDOPSIS THALIANA CHLOROPHY...		Lus10039372 [exp]	26.3	0.8328
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10029787 [exp]	28.6	0.8323
AT5G05200			Protein kinase superfamily pro...		Lus10012864 [exp]	28.9	0.8344
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10003143 [exp]	34.2	0.8218
AT1G49230			RING/U-box superfamily protein...		Lus10005818 [exp]	34.6	0.8199
AT5G61820			unknown protein		Lus10042158 [exp]	35.1	0.7782

Compare expression of checked genes

Lus10035145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.