Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29400 567 / 0 ATEXO70E1 exocyst subunit exo70 family protein E1 (.1) AT5G61010 452 / 4e-151 ATEXO70E2 exocyst subunit exo70 family protein E2 (.1.2) AT5G50380 399 / 8e-130 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT3G14090 362 / 2e-116 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G72470 356 / 4e-114 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT1G54090 345 / 6e-110 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT5G58430 305 / 1e-94 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT1G07000 281 / 9e-86 ATEXO70B2 exocyst subunit exo70 family protein B2 (.1) AT1G07725 271 / 9e-82 ATEXO70H6 exocyst subunit exo70 family protein H6 (.1) AT5G59730 268 / 2e-80 ATEXO70H7 exocyst subunit exo70 family protein H7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031956 [exp] 1276 / 0 AT3G29400 581 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10016764 [exp] 407 / 3e-133 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10022459 [exp] 389 / 6e-127 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10008126 [exp] 384 / 2e-124 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10013163 [exp] 366 / 3e-120 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10004917 [exp] 290 / 9e-89 AT5G59730 532 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10040872 [exp] 281 / 2e-85 AT5G59730 533 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10005436 [exp] 280 / 7e-85 AT5G59730 535 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10015221 [exp] 280 / 1e-84 AT2G39380 533 / 0.0 exocyst subunit exo70 family protein H2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G093966 [exp] 858 / 0 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1) Potri.015G058200 [exp] 536 / 0 AT5G61010 585 / 0.0 exocyst subunit exo70 family protein E2 (.1.2) Potri.017G093700 [exp] 520 / 2e-177 AT3G29400 404 / 4e-132 exocyst subunit exo70 family protein E1 (.1) Potri.012G097100 [exp] 413 / 1e-135 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.015G094800 [exp] 409 / 3e-134 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.001G166400 [exp] 377 / 4e-122 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.003G068700 [exp] 374 / 6e-121 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.017G093833 [exp] 330 / 6e-103 AT3G29400 318 / 1e-98 exocyst subunit exo70 family protein E1 (.1) Potri.013G152900 [exp] 318 / 1e-99 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.019G124000 [exp] 309 / 7e-96 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10035146 pacid=23162499 polypeptide=Lus10035146 locus=Lus10035146.g ID=Lus10035146.BGIv1.0 annot-version=v1.0 ATGGAGGCATTTAATTCCCAAATTCCACAACTTGAAGGTGAAGAGAGCTTAATAGCAGCCGCCAGGCAAATCGTGAGGGCCTTAGGATCTCAACAGAATC TCACAGATGATGCAAAGAAAGTCTTGGCTGACCTAGGAACCCAATTGTCCAACATAACTGTAATCAGCGAGAACAACCATCATGATGATGACGACGATCA AGTACAAGAAGAAGAAAGAGATATCAGCGAGCTCGAAGCACATTTGAATACGGTCCAGCAAAGGATCTCGAATTGGGAGTCAGACCACTCTATGATATGG GACTTAGGTCCAGATGAAGCTGGTGAGTATCTAAACGCCACTCTTGATGCCCAGAAATTGACTGCAAGATTGGAGGACTTGTCCAATGGCGGCTCGGATG GAAATGGTGATTTGCTCCGCAGGGCTTACGATGTTCTTCAGATGGCGATGGGGAGGCTCGAGCAAGAGTTCACACACTTGCTTGTACAGAACCAGATGCC GTTCGATCGAGAACTAGCTTCTTTCCGTTCGAGCGAAGACGATGGAATTGATTTCAGCTCGGTTGTCTCGGCTGGGGATGACTCGGGTCGTTTCGACGAC CCGATTGCTAGCGATAGTGTTAGCAAGACATGGGATCAGGAAAACAGCATCATGGACTTGGTTCATCCTGATTCGGTCCCCGATCTTAGGGACATTGCGA ATTTGATGTTTGTTTCCGGATATGGTCACGAATGTTCTCAAGCGTATATAACCGTCCGGAGAGACGCCCTGGACGAGTGTCTGTTCAACCTTGACATGGA GCGGCTAAGCATCGAGGATGTTTTGCGATTGGAATGGGGGAGTTTGAATTCCAAGATCAAGAAATGGGTTCGAGCTTTGAAAGTGTTCGTCCGAGTCTAT CTGGCGAGTGAGAGGTTCCTTAGCGAGCAAGTATTCGGACAGCTTGAGAATACAACCTATTCGGATTGTTTCATCGAGGCTTCGAAGGGGTCGATGCTCC AGCTGTTGAATTTTGGGGAAGCGATATCGATCGGTCCTCATAAACCGGAGAAGCTGTTTCCTATTCTGGACATGTACGAGATCGTTGCGGATGTTATTCC GGATATCGATTCATTGTATACAAATGATGCTGGTTCCTGCGTTAGAATCGATTGCCACGAGCTCCAAAGGAGATTGGGCGAATCGGTCAGGGCTGCATTT CTCGAGTTTCAGAGTGCCATTGCGACGAGCACTTCCACGAACCCTTTTGCTGGCGGAGGGATTCATCACCTGACTCGCTACGTTATGAACTACGTAAACA CGTTGACCGATTACCAGGACTCGTTGAATTTCCTATTGAAAGATCAAGATCGAGTTTTACTCGATCATCATCCGGTCGTGATGTCTCCCGATATAAGTCC ATCCCGGGAGGGGGACAAAGCAACAACCGGGGAATCATCATCATCATCTCCTAATGACGATGTATCGACATTGGCACTACATTTTCGATCGGTTACCTCG ATTCTCGAGTGTAACCTGGACTCGAAGGCCAGGCTATACCGGGATGTTTCCTTACAGCATGTTTTCATGATGAACAATATCCACTACATGGCACAGAAAG TGAAGAATAATTCGGCGTTGAGGCACATTTTCGGAGACGAGTGGATTAGGAAGAGGAACTGGAAGTTCCAGCAGCACGAGATTTACTACGAGAGGGCGAC GTGGAGTTCGATACTGTCGTTGCTGAGGGATGAAGGGAATTCGCACGTGATTTCGAAGTCTCAGCTGAGGGACATGATCAGGAACTTCTACGCGGCGTTC GAGGATGTTTACAGGACGCAGACTTCGTGGCTTATCCCGGATGGTCAGCTGCGAGATGATCTGCGAATTTCGACGTCATTGAAGGTGATTCAGGCTTACA GGAATTTTGTTGGGAGGTATACCAACAGCATTGGTGATAGGCATATAAAGTACAGTGCTGATGATTTGGAGAACTATTTGATGGATCTGTTTGAAGGGTC TCAGAAGTCATTGCAGAACTCTCACAGGAGATGA
AA sequence Show only first row Show all	>Lus10035146 pacid=23162499 polypeptide=Lus10035146 locus=Lus10035146.g ID=Lus10035146.BGIv1.0 annot-version=v1.0 MEAFNSQIPQLEGEESLIAAARQIVRALGSQQNLTDDAKKVLADLGTQLSNITVISENNHHDDDDDQVQEEERDISELEAHLNTVQQRISNWESDHSMIW DLGPDEAGEYLNATLDAQKLTARLEDLSNGGSDGNGDLLRRAYDVLQMAMGRLEQEFTHLLVQNQMPFDRELASFRSSEDDGIDFSSVVSAGDDSGRFDD PIASDSVSKTWDQENSIMDLVHPDSVPDLRDIANLMFVSGYGHECSQAYITVRRDALDECLFNLDMERLSIEDVLRLEWGSLNSKIKKWVRALKVFVRVY LASERFLSEQVFGQLENTTYSDCFIEASKGSMLQLLNFGEAISIGPHKPEKLFPILDMYEIVADVIPDIDSLYTNDAGSCVRIDCHELQRRLGESVRAAF LEFQSAIATSTSTNPFAGGGIHHLTRYVMNYVNTLTDYQDSLNFLLKDQDRVLLDHHPVVMSPDISPSREGDKATTGESSSSSPNDDVSTLALHFRSVTS ILECNLDSKARLYRDVSLQHVFMMNNIHYMAQKVKNNSALRHIFGDEWIRKRNWKFQQHEIYYERATWSSILSLLRDEGNSHVISKSQLRDMIRNFYAAF EDVYRTQTSWLIPDGQLRDDLRISTSLKVIQAYRNFVGRYTNSIGDRHIKYSADDLENYLMDLFEGSQKSLQNSHRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Lus10035146 [exp]	0	1
AT5G39450			F-box family protein (.1)		Lus10037697 [exp]	11.8	0.6522
AT1G57790			F-box family protein (.1)		Lus10017027 [exp]	14.7	0.6894
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Lus10038717 [exp]	15.1	0.6825
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10013216 [exp]	39.9	0.6815
AT1G02290			unknown protein		Lus10018907 [exp]	41.5	0.6809
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10005095 [exp]	61.4	0.5846
AT1G70505			unknown protein		Lus10030594 [exp]	67.2	0.6287
AT1G55290			2-oxoglutarate (2OG) and Fe(II...		Lus10036082 [exp]	80.2	0.5936
AT5G36930			Disease resistance protein (TI...		Lus10010574 [exp]	82.5	0.6277
AT3G44380			Late embryogenesis abundant (L...		Lus10020628 [exp]	87.0	0.6087

Compare expression of checked genes

Lus10035146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.