Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15710 715 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30950 122 / 9e-30 UFO UNUSUAL FLORAL ORGANS, F-box family protein (.1) AT1G27340 112 / 3e-26 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G61590 100 / 2e-22 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G43190 69 / 2e-12 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G76920 66 / 1e-11 F-box family protein (.1) AT4G33160 66 / 2e-11 F-box family protein (.1) AT5G49610 62 / 5e-10 F-box family protein (.1) AT3G57580 61 / 1e-09 F-box and associated interaction domains-containing protein (.1) AT3G17500 57 / 1e-08 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031955 [exp] 874 / 0 AT5G15710 719 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10015775 [exp] 131 / 6e-33 AT1G27340 598 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037030 [exp] 128 / 1e-31 AT1G27340 615 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10010610 [exp] 114 / 1e-27 AT5G43190 327 / 2e-110 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10018690 [exp] 110 / 7e-26 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10007740 [exp] 109 / 4e-25 AT5G43190 292 / 2e-94 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10007755 [exp] 107 / 6e-25 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10007855 [exp] 107 / 6e-25 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10003029 [exp] 103 / 2e-23 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G112400 [exp] 744 / 0 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G102300 [exp] 743 / 0 AT5G15710 744 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G057100 [exp] 124 / 2e-30 AT1G27340 613 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G160900 [exp] 124 / 2e-30 AT1G30950 554 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.003G171300 [exp] 122 / 6e-30 AT1G27340 628 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G074100 [exp] 119 / 7e-29 AT1G30950 528 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.014G016200 [exp] 105 / 1e-24 AT5G43190 277 / 2e-90 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G118700 [exp] 102 / 1e-23 AT5G43190 352 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G166500 [exp] 101 / 7e-23 AT3G61590 542 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.014G093200 [exp] 99 / 3e-22 AT3G61590 538 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10035147 pacid=23162453 polypeptide=Lus10035147 locus=Lus10035147.g ID=Lus10035147.BGIv1.0 annot-version=v1.0 ATGAGAGATTACGAGCATATAATTATTTTCTGCAACCCCAAAAATTTATGCCAGAAGTATTCCGCCTCCCTTGCACTTCTCTCTGCCAAGCTGTTCCCTT CCCAGTTCCCACACCAAGCCAAACCACTGGATAATCTCAACTCAATCCCTATCGGCTATCATTCCAAAGCTAAGCTTAACCCCCATTTCATACCTTCTTC CATCTGTCATTTCCAATTCACCCTTCTCCATCCATCGCTTTCCAATCCCTCCAACGATTTCTTCTCATCGTCACCCGCTCCAAGATTGTTGTCTCCGGAT CTGATATTCCACAATCACGGCATGGATGAAATTGGAGAATCATCGGAATCTGCGTCAGCTTTAGCTAGTCCTAGATCGGTGATAACATATGGATACCGTG ATGAAGGTTGTTGCCCTAGGCAAGTTTCACCGATTAGGATTGGCGGGTCGAGAAACACCAGCCCCATGGGTCGGGTTGGGTCTAGAAACACCAGTCCTTT GAAGCAGAAAGTAGTGATGACTAAACCCCGTGGTTTGGATGAAGAGACTGCCACCACCACATTCGGCAAGGCTATTTACTACTGTGATGTTCAGATGGAG GACAACATATGGGCAATGTTGCCCGAAGATCTCTTGAATGAGATCTTAGCTCGAGTTCCGCCGTTCATGATCTTTCGCCTTCGATCGGTTTGCAAACGGT GGAATTCGATCTTGCAAGATATCAGCTTCCTCAAATTCCACTCGCAGGTGCCTTCTCACGGTCCGTGTCTTTTCGCATTCTGGAAGAACTCGCAGACTCC TCAGTGTTCTGTTCTCAGCTTGCCGTTGAAGACTTGGTATCGAATTCCTTTCACGTTTCTACCGAACTGGGCGGTTTGGTTGGTCGGTTCTTCGGGCGGA CTCGTTTGCTTTTCCGGACTCGATGGGTTGATTTTCAAGACGTTGGTTTGCAATCCGTTGACTCAGACCTGGAGAACTCTTCCCAGCATGCATAATAATC AGCAGAGGCAGTTGATATTGGTTGTCGATCGGTCGGACAGGTCGTTCAAAGTGATAGCTACCAGCGATGTTTACGGCGATAAATCGTTGCCTACCGAAGT GTACGATTCGAAACTCGACAGATGGGTTGTTCATCAGATTATGCCTGCGGTTAATCTATGCTCCTCAAAGATGGCGTATTGCGACTCGAGATTGTACCTC GAAACTCTTTCTCCACTCGGTTTGATGATGTATAAGCTCGACACGGGTTACTGGGAACATATTCCTGTGAAGTTTCCGCGGTCTCTGTTGGATGGATACT TGGTGGCTGGAACCCAGAAGCGGTTGTTTTTGGTGGGAAGAATCGGCCTATATAGTACGCTTCAGAGTATGAGGATTTGGGAGTTGGATCATGCGAAGAA CATGTGGGTAGAGATTAGTAGAATGCCACCAAAGTATTTCAGGACGTTGCTGAGGCTATCGGCTGATCGGTTCGAGTGCTTTGGACAGGATAACTTGATA TGTTTCACGTCTAGGAACCAAGGGAAGGGTCTGTTGTATGATGTGGATAAGAAGGTGTTGTCGTGGATCGGCGGATGTCCCCTTGAGTCGTATAACAGCC AGGTGTGCTTTTATGAGCCTAGATTTGATGCTTCAATCTATTGA
AA sequence Show only first row Show all	>Lus10035147 pacid=23162453 polypeptide=Lus10035147 locus=Lus10035147.g ID=Lus10035147.BGIv1.0 annot-version=v1.0 MRDYEHIIIFCNPKNLCQKYSASLALLSAKLFPSQFPHQAKPLDNLNSIPIGYHSKAKLNPHFIPSSICHFQFTLLHPSLSNPSNDFFSSSPAPRLLSPD LIFHNHGMDEIGESSESASALASPRSVITYGYRDEGCCPRQVSPIRIGGSRNTSPMGRVGSRNTSPLKQKVVMTKPRGLDEETATTTFGKAIYYCDVQME DNIWAMLPEDLLNEILARVPPFMIFRLRSVCKRWNSILQDISFLKFHSQVPSHGPCLFAFWKNSQTPQCSVLSLPLKTWYRIPFTFLPNWAVWLVGSSGG LVCFSGLDGLIFKTLVCNPLTQTWRTLPSMHNNQQRQLILVVDRSDRSFKVIATSDVYGDKSLPTEVYDSKLDRWVVHQIMPAVNLCSSKMAYCDSRLYL ETLSPLGLMMYKLDTGYWEHIPVKFPRSLLDGYLVAGTQKRLFLVGRIGLYSTLQSMRIWELDHAKNMWVEISRMPPKYFRTLLRLSADRFECFGQDNLI CFTSRNQGKGLLYDVDKKVLSWIGGCPLESYNSQVCFYEPRFDASIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15710			Galactose oxidase/kelch repeat...		Lus10035147 [exp]	0	1
AT2G30160			Mitochondrial substrate carrie...		Lus10042258 [exp]	5.8	0.8256
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Lus10018086 [exp]	12.1	0.8046
AT4G38870			F-box and associated interacti...		Lus10003705 [exp]	13.7	0.8106
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10018184 [exp]	17.0	0.7911
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10020996 [exp]	17.9	0.8019
AT1G12530			unknown protein		Lus10006705 [exp]	18.0	0.7586
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10026230 [exp]	18.1	0.7943
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10027366 [exp]	18.7	0.8041
AT1G06730			pfkB-like carbohydrate kinase ...		Lus10024866 [exp]	23.4	0.7981
AT2G20830			transferases;folic acid bindin...		Lus10018557 [exp]	24.2	0.7492

Compare expression of checked genes

Lus10035147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.