Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30380 548 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G24760 427 / 1e-149 alpha/beta-Hydrolases superfamily protein (.1) AT5G14390 426 / 3e-149 alpha/beta-Hydrolases superfamily protein (.1) AT3G01690 423 / 4e-148 alpha/beta-Hydrolases superfamily protein (.1) AT1G13610 371 / 1e-127 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G38220 363 / 7e-125 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G24320 347 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1) AT1G66900 345 / 1e-118 alpha/beta-Hydrolases superfamily protein (.1) AT4G31020 345 / 1e-118 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G32190 314 / 2e-104 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031953 [exp] 748 / 0 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10022307 [exp] 422 / 3e-147 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10042075 [exp] 416 / 5e-145 AT4G24760 523 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10036842 [exp] 408 / 2e-141 AT3G30380 423 / 2e-147 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10018081 [exp] 419 / 7e-139 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10017617 [exp] 362 / 6e-124 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10000544 [exp] 361 / 2e-123 AT3G01690 488 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10033575 [exp] 355 / 3e-121 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10040038 [exp] 352 / 8e-121 AT4G31020 491 / 3e-177 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G102500 [exp] 576 / 0 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G112300 [exp] 571 / 0 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G112600 [exp] 509 / 0 AT3G30380 458 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G136900 [exp] 506 / 1e-180 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G340000 [exp] 452 / 5e-159 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G087100 [exp] 440 / 2e-154 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G090800 [exp] 435 / 9e-153 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G117633 [exp] 385 / 2e-133 AT5G38220 468 / 9e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.004G097300 [exp] 380 / 2e-131 AT5G38220 469 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.006G188100 [exp] 348 / 8e-120 AT4G31020 440 / 3e-157 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10035148 pacid=23162373 polypeptide=Lus10035148 locus=Lus10035148.g ID=Lus10035148.BGIv1.0 annot-version=v1.0 ATGGGGGCGATGACGTCGACGATGGCGGCGAAATTCGCCTTTTTTCCGCCGACCCCGCCATCTTACAAGGTGGAGGTAGATGAGCCGAGTGGAAAGCTCA AGATGGTTGGGCCTGGGATCGGCGTCAGGGGAAATGTCGATGTGTGGAAGCTGGATACGAAGAGAGGGAATCAGGTGGTGGCGGTTTATTTTAAGAACCC TGCTGCTTCGCTTACTCTTCTCTACTCTCATGGTAATGCTGCGGATCTGGGACAGATGTTCGATTTGTTCAGTGAGCTGAGTTTGCATCTCCGAGTCAAC CTTATGGGGTATGATTACAGCGGGTATGGAAAGTCTACCGGAAAGCCGAGCGAGCAAAATACGTATGCTGATGTAGAAGCTGTATATAGATGCCTTGAAG AGAAATATGGGGCAAAGCAAGAAGATGTCATTTTGTATGGACAATCAGTTGGTAGTGGACCTACACTAGATTTGGCAATCCAGTTGCCAAGATTAAGGGC TGTTGTTCTCCATAGCCCGATTGCGTCTGGTCTCCGAGTGATGTATCCTGTTAAACGAACTTATTGGTTCGACATTTATAAGAACATTGATAAAATTCCA CTCGTAAGATGTCCGGTACTGGTGATTCACGGAACTTCTGATGATGTTGTAGATTGGTCCCATGGCAAGCAGCTGTGGGAACTCTGTCAAGAGAAATATG AACCGTTGTGGGTGAAGGAAGGGAATCATTGTGATCTGGAGATGCATCCACAGTACATCAAGCATCTAAAAAAGTTCATATCAGCCATTGAGAAATCCTG TTTGAGGAATGACTCCGTTCCATCCACTCAACAGCCGGATATCCCTAGGAAGAGCACCGACGTTAGAGAACCTTCCAGATCAAGCATCGACCAGCGGGAT AAGGTTAAGCCGAGTACGGAGCAGAGAGAAAAGACTAGACCTAGCACAGATCGGAGAGACAAATCCAGAGGCAGCATTGACCGGAGAGAAAAATCAAGGA AAAGCATGGACCGGCCGGAGAAAGAAAACCTTACTGTCGAGCAGCACGATAAAGCAAGGAACAGCATTGATCGGTTCGGTGGGATGATACGTTCGGTTGG ATTATGCAACATTGATTGTTTCAAGCCCACAGCTACAGCCCTCTAA
AA sequence Show only first row Show all	>Lus10035148 pacid=23162373 polypeptide=Lus10035148 locus=Lus10035148.g ID=Lus10035148.BGIv1.0 annot-version=v1.0 MGAMTSTMAAKFAFFPPTPPSYKVEVDEPSGKLKMVGPGIGVRGNVDVWKLDTKRGNQVVAVYFKNPAASLTLLYSHGNAADLGQMFDLFSELSLHLRVN LMGYDYSGYGKSTGKPSEQNTYADVEAVYRCLEEKYGAKQEDVILYGQSVGSGPTLDLAIQLPRLRAVVLHSPIASGLRVMYPVKRTYWFDIYKNIDKIP LVRCPVLVIHGTSDDVVDWSHGKQLWELCQEKYEPLWVKEGNHCDLEMHPQYIKHLKKFISAIEKSCLRNDSVPSTQQPDIPRKSTDVREPSRSSIDQRD KVKPSTEQREKTRPSTDRRDKSRGSIDRREKSRKSMDRPEKENLTVEQHDKARNSIDRFGGMIRSVGLCNIDCFKPTATAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G30380			alpha/beta-Hydrolases superfam...		Lus10035148 [exp]	0	1
AT5G66430			S-adenosyl-L-methionine-depend...		Lus10036548 [exp]	2.0	0.7547
AT3G06890			unknown protein		Lus10037501 [exp]	11.6	0.7769
AT5G51970			GroES-like zinc-binding alcoho...		Lus10027410 [exp]	23.8	0.7401
AT3G12600		ATNUDT16	nudix hydrolase homolog 16 (.1...		Lus10026164 [exp]	27.1	0.6692
AT1G20650		ASG5	ALTERED SEED GERMINATION 5, Pr...		Lus10030741 [exp]	29.2	0.7059
AT3G54880			unknown protein		Lus10013824 [exp]	36.4	0.6667
AT4G10110			RNA-binding (RRM/RBD/RNP motif...		Lus10007895 [exp]	41.8	0.7239
AT4G14455		ATBS14B ,ATBET1...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10041158 [exp]	111.1	0.6745
AT1G27770		PEA1, ACA1	PLASTID ENVELOPE ATPASE 1, aut...		Lus10018687 [exp]	113.3	0.6408
AT2G18570			UDP-Glycosyltransferase superf...		Lus10024037 [exp]	123.7	0.6636

Compare expression of checked genes

Lus10035148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.