Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15700 1262 / 0 DNA/RNA polymerases superfamily protein (.1.2) AT1G68990 1228 / 0 MGP3 male gametophyte defective 3 (.1.2) AT2G24120 1151 / 0 PDE319, SCA3 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031952 [exp] 1887 / 0 AT5G15700 1274 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10005097 [exp] 1431 / 0 AT5G15700 1289 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10034355 [exp] 1410 / 0 AT2G24120 1276 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10019208 [exp] 1201 / 0 AT1G68990 1245 / 0.0 male gametophyte defective 3 (.1.2) Lus10036844 [exp] 1172 / 0 AT1G68990 1244 / 0.0 male gametophyte defective 3 (.1.2) Lus10022181 [exp] 1111 / 0 AT2G24120 1300 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10010771 [exp] 674 / 0 AT2G24120 814 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10010770 [exp] 421 / 2e-140 AT2G24120 464 / 2e-157 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G105801 [exp] 1336 / 0 AT5G15700 1331 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Potri.004G111600 [exp] 1322 / 0 AT5G15700 1326 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Potri.010G136700 [exp] 1297 / 0 AT1G68990 1248 / 0.0 male gametophyte defective 3 (.1.2) Potri.008G112800 [exp] 1295 / 0 AT1G68990 1269 / 0.0 male gametophyte defective 3 (.1.2) Potri.018G103300 [exp] 1167 / 0 AT2G24120 1381 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Potri.006G181100 [exp] 1152 / 0 AT2G24120 1359 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00940 [flax] [poplar] RNA_pol DNA-dependent RNA polymerase
Representative CDS sequence Show only first row Show all	>Lus10035150 pacid=23162400 polypeptide=Lus10035150 locus=Lus10035150.g ID=Lus10035150.BGIv1.0 annot-version=v1.0 ATGTCCAATCCCACTCCCCCACTTCTCTCCGCTAGAGAATTCCACCACTTCCTCTTCTTCAACACTAATCCTTCCGTCCTCTCCCCATTCCCGCCCACCA CCACCCAATCCATTTCCAGAATCCACCGGAAGACAACATATGCCTCATTAGGCCACACTTTCTGCCCCAAATCCACACCGGAAGTTTTCACGCGCGCGAG CCTTGCAACGGGGGCGGTTACATCGCCGGCGGCGGAAGAAGCTGAAGACGAAGAAGAAGAAGATTCCGCCTTTTTTGCTGCGGAAGTGAAGGAATTGCTG CTGGAGCTCAGGAAAGAACAGCGGGAGGTTACCGCTAGGAAGAGACTGGAAAGAATTGCGCCTGGGATGGAATGGAAAAAGTACGAGGAGTTGAAGAGGA GGCAAGTTAAGATTGAGACTGAAGCGTGGGAGAAGGCCGCGGCTGAGTATCGGCAGCTTCTGAAGGAGATGTGTGAGAATAAGTTGGCTCCTAGTTTGCC TTACATGAAGAGCTTGTTCCTTGGCTGGTTCGAGCCGTTTAGGGATGCGATTCTGAAAGAGCAGCAGTTGATGAGGCAAGGGAAGTGTAGGGCGTCCTAT GCTCCCTATTTTGATCTCTTGCCTGCTGACATGATGTCTGTTATCACAATGCATAAGTTGATGGAGCTGTTGTTGACTGTTGGGGAGCATGGTTCTGTAA AGGTCGTCAATGCTGCTATTGCTGTTGGCGATGCCATTGAACAGGAGATCAGAATAAAGAACTTCTTGGACAAAACAAAGAAGAAAAGGGCTGCTAAAGC TGAGAAAGTTGAAGATGGTGAATCTGCTGTGGCGGCTAAGGAACAAGAGAAAATGAGACGGAAGGTCATTGAGTTAATTAGGAAACAGAAGTTACCTGCA GTTAGACGAATGGTGAAGGGTTATGATGAGTCAAGACCCTGGAGTCAGGAAGCTAAGGCTAAAGTTGGAAGCCGTGTAATTGAATTACTCATACAAACTG CGTATGTTCAACCTCCGGCTGACCAAATATGTGATGGTCCTCCTGATATTCGACCTGCCTTTATACATACTGTCATAACTATGGCAAAAGAGGATAAGAA GACAGGTAGACAGTGCGGTGTTATTCAGTGTGATCCGGTCGTCTTAAAAGGACTTGAGAGAAGTGCGAGACACATGGTGATCCCGTACATGCCAATGTTG GTGCCTCCTGTCAAGTGGACTAAGTATGACAAAGGAGCTTACTTTTTCTTGCCTTCCTATATCATGCGCACTCACGGTTCCAAACAACAACGTGAAACTA TGAGAAGGGCCTCTAGGACACAACTACAACCCGTGTTTGAGGCCCTGGACACACTTGGAAGTACTAACTGGAGGATAAATGATAGGGTACTAGATGTTGT AGATAGCATGTGGAACAGCGGAGGCTCTCTGGCAAATTTAATAGATCGGGAGGATGTTCCATTACCGGAGAAGCCAGATACAGAAGATGAAACTTTACTA ACAAAATGGAGATGGGAATTAAGAAAAGCAAAAAAAGAGAACCGGGAGAGACATAGCTTACGTTGTGACACAGAACTCAAACTTTCTGTAGCACATAAAA TGAAGGATGAAGAAGGCTTTTATTTTCCTCATAACATTGATTTTCGAGGACGTGCATACCCGATGCACCCACACTTGAATCACCTTGGTTCAGATATGAG TCGAGGTGTTTTGGAATTTGCAGAAGGCCGTCCTCTTGGGAACTCAGGTTTGCGATGGCTGAAGATACACCTAGCAAACCTATTCGCTGGTGGCGTAGAT AAGTTATCATATGAAGATCGGATAAATTTTACTGAGAATCACTTATATGACATATTTGATTCCGCTGACAAGCCGCTGGAAGGACACCGCTGGTGGTTGC AGGCTGAAGATCCATTCCAGTGCTTGGCAGCTTGTATCAACCTTACCGACGCTTTGAGAAGTTTCACTCCTGAAACCTATGTTTCGCATCTTCCTATTCA TCAGGATGGCTCGTGCAATGGTTTACAGCATTATGCGGCCCTTGGAAGGGATAAGCTAGGAGCTGCTGCTGTTAATTTGGTTGCGGCAGAAATTCCTGCT GATGTCTACTCTGACATAGCTGCAAGAGTTCTTGATATCATGCACGAGGATGCATCAAAAGACCCCACAAGCTTTCCTGATGCATTACTAGCAACAGCAT TGCTCAACCAGGTGGATAGGAAGTTGGTGAAGCAGACAGTGATGACATCTGTATATGGTGTTACGTATGTTGGTGCCAGAGATCAAATCATGAGAAAGTT GAAAGAGCGAGGCACTGAGCTAGGTGATACAAAGATATTTGCCGCTTCTTGCTATGCTGCTAAAGTGACGTTAATTGCACTGGAGGAAATGTTTGAAGCT GCACGTCGTATAATGAGCTGGTTGGGCGAATGTGCTAAGGTTATTGCTTCAGAAAACAAACCAGTAAGGTGGACAACTCCTCTCGGGCTTCCTGTTGTGC AACCATATAGGAATTCAGGGCGCCATCTTATCAAGACTTCCCTCCAGGTCTTAACACTGCAACGGGAGACCGAGAAGGTCATGGTCAAGAAGCAAAGAAC AGCTTTCCCACCTAATTTTGTGCACTCTCTGGATGGTTCACATATGATGATGACTGCTATTGCCTGCCGAAGAGAAGGCTTGAACTTTGCAGGTGTCCAC GATTCATTCTGGACTCACGCATGTGATGTGGATCAACTGAACATGATACTAAGAGAGAAGTTCGTTGAACTCTACGACACCCCCATACTAGAAGATTTAC TGGAGAGCTTTAAGGAATCATTTCCTACGCTAACATTCCCCCCTCTACCCGAAAGAGGAGATTTCGAGCTAAGAGAGGTTTTGCAGTCTGATTATTTTTT CAACTAG
AA sequence Show only first row Show all	>Lus10035150 pacid=23162400 polypeptide=Lus10035150 locus=Lus10035150.g ID=Lus10035150.BGIv1.0 annot-version=v1.0 MSNPTPPLLSAREFHHFLFFNTNPSVLSPFPPTTTQSISRIHRKTTYASLGHTFCPKSTPEVFTRASLATGAVTSPAAEEAEDEEEEDSAFFAAEVKELL LELRKEQREVTARKRLERIAPGMEWKKYEELKRRQVKIETEAWEKAAAEYRQLLKEMCENKLAPSLPYMKSLFLGWFEPFRDAILKEQQLMRQGKCRASY APYFDLLPADMMSVITMHKLMELLLTVGEHGSVKVVNAAIAVGDAIEQEIRIKNFLDKTKKKRAAKAEKVEDGESAVAAKEQEKMRRKVIELIRKQKLPA VRRMVKGYDESRPWSQEAKAKVGSRVIELLIQTAYVQPPADQICDGPPDIRPAFIHTVITMAKEDKKTGRQCGVIQCDPVVLKGLERSARHMVIPYMPML VPPVKWTKYDKGAYFFLPSYIMRTHGSKQQRETMRRASRTQLQPVFEALDTLGSTNWRINDRVLDVVDSMWNSGGSLANLIDREDVPLPEKPDTEDETLL TKWRWELRKAKKENRERHSLRCDTELKLSVAHKMKDEEGFYFPHNIDFRGRAYPMHPHLNHLGSDMSRGVLEFAEGRPLGNSGLRWLKIHLANLFAGGVD KLSYEDRINFTENHLYDIFDSADKPLEGHRWWLQAEDPFQCLAACINLTDALRSFTPETYVSHLPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAAEIPA DVYSDIAARVLDIMHEDASKDPTSFPDALLATALLNQVDRKLVKQTVMTSVYGVTYVGARDQIMRKLKERGTELGDTKIFAASCYAAKVTLIALEEMFEA ARRIMSWLGECAKVIASENKPVRWTTPLGLPVVQPYRNSGRHLIKTSLQVLTLQRETEKVMVKKQRTAFPPNFVHSLDGSHMMMTAIACRREGLNFAGVH DSFWTHACDVDQLNMILREKFVELYDTPILEDLLESFKESFPTLTFPPLPERGDFELREVLQSDYFFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15700			DNA/RNA polymerases superfamil...		Lus10035150 [exp]	0	1
AT5G15700			DNA/RNA polymerases superfamil...		Lus10031952 [exp]	1.0	0.9856
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10028505 [exp]	1.4	0.9721
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10015552 [exp]	2.2	0.9641
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Lus10031160 [exp]	2.4	0.9639
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001057 [exp]	3.0	0.9720
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Lus10005031 [exp]	3.5	0.9660
AT3G01370		ATCFM2	Arabidopsis thaliana CRM famil...		Lus10039467 [exp]	4.5	0.9579
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009671 [exp]	5.2	0.9629
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10026884 [exp]	5.7	0.9527
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10013636 [exp]	5.9	0.9633

Compare expression of checked genes

Lus10035150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.