Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51170 300 / 1e-98 unknown protein AT1G13570 108 / 3e-25 F-box/RNI-like superfamily protein (.1) AT1G66290 57 / 2e-08 F-box/RNI-like superfamily protein (.1) AT5G02930 52 / 1e-06 F-box/RNI-like superfamily protein (.1) AT4G13985 50 / 2e-06 FBD1 FBD-associated F-box protein (.1) AT5G02920 48 / 6e-06 F-box/RNI-like superfamily protein (.1) AT3G44060 47 / 2e-05 F-box/RNI-like superfamily protein (.1) AT5G56810 46 / 5e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G49610 45 / 0.0001 F-box family protein (.1) AT3G58900 45 / 0.0001 F-box/RNI-like superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031950 [exp] 416 / 2e-143 AT5G51170 340 / 8e-118 unknown protein Lus10028366 [exp] 191 / 1e-56 AT1G13570 98 / 4e-23 F-box/RNI-like superfamily protein (.1) Lus10041818 [exp] 194 / 6e-56 AT1G13570 154 / 3e-42 F-box/RNI-like superfamily protein (.1) Lus10040760 [exp] 143 / 4e-37 AT1G13570 157 / 3e-43 F-box/RNI-like superfamily protein (.1) Lus10028368 [exp] 120 / 4e-32 AT1G13570 69 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10002959 [exp] 123 / 4e-31 AT1G13570 112 / 4e-28 F-box/RNI-like superfamily protein (.1) Lus10006346 [exp] 117 / 4e-28 AT1G13570 140 / 2e-37 F-box/RNI-like superfamily protein (.1) Lus10034415 [exp] 107 / 1e-25 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10019144 [exp] 106 / 2e-24 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G111628 [exp] 332 / 1e-110 AT5G51170 325 / 5e-112 unknown protein Potri.010G134200 [exp] 112 / 2e-26 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 101 / 7e-23 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 93 / 5e-20 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.017G107600 [exp] 84 / 6e-17 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.008G110400 [exp] 67 / 9e-12 AT1G13570 419 / 2e-144 F-box/RNI-like superfamily protein (.1) Potri.004G034500 [exp] 62 / 4e-10 AT1G61330 175 / 3e-49 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G136200 [exp] 57 / 2e-08 AT1G56400 215 / 2e-64 F-box family protein (.1.2) Potri.001G322900 [exp] 56 / 6e-08 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G042900 [exp] 53 / 4e-07 AT1G61330 226 / 2e-68 FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0247 [flax] [poplar] 2H PF09749 [flax] [poplar] HVSL Uncharacterised conserved protein
Representative CDS sequence Show only first row Show all	>Lus10035151 pacid=23162363 polypeptide=Lus10035151 locus=Lus10035151.g ID=Lus10035151.BGIv1.0 annot-version=v1.0 ATGGAAGCTCTCGTAGCATCCTATGGAGATGATTCGTCCGATTCCGACTCCGAAGTTTCTCCTCCGCCGGAACCCGATTCAGCAACAGCTTCAAATACTC AATCGCCGCTTCAGCTTCCGCTTCCGCCACCTCCTATTTCGCTTCTCACGCCTCCTTCCAGCTCAATTGCAACGCTGGATTACTTCCAACCCTGTCAGCC CAGTCGACTGAGAAGCTTTCCCCATGTGGAAGGTAACTACTCTTTGCACGTCTACATTCCGGTTCATATCCCTCCAGCGTCGAAGAAACAAGTGGTGCCA TTTCTGAAGAAAATTTCCCAACTTGTGCCTCATCTCCACGTCGTGGATGCCGATGTTCCGCTGAGCAGTTTATGCAAGGATGACCAGAAGCTGGAGCAAG TCGCGGTAGGGAGAGAGTTTCATGTTAGCCTAGGGAGGACTGTTCCCATTCGTGTTCATCAGATTGACTCTGTGGTCGCTATGCTTCGCCAGAAGCTTCA GTCTCAAAACCGGTACTGGATTGATTTCAACAAGTGGGAGGTTTTTGTTAATGATGATCAAACACGCACTTTTCTTTCGATTGAAGTGGTTACAGGGGGG CTAGCTGAGATTACTAAACAGATTAATTCAGTTAATGAAGTTTACAAACTACACAACCTTCCAGAGTTCTATAAGGATCCACGTCCGCATATATCTTTGG CATGGGCATTGGGAGACATCAGTGATTCATTCAAGAGAGTAGTAGCTGAAGAGGAAGTGAAGAGATCCAGGATTGCTGGTTCAGTCCCGAATCGTTCTGA ATCTACGGTGGAGCGGCTCCGGGATTGTACCGATGTGCTGGAGAAGATTCTGACGTTATTACCCATAAAAGACGCAGCCAGAACAAGCATCTTGTCCGGA AAATGGCGACATCGTTGGAGAGGTATTTCTCAACTCGTCTTCGATCACAACTTCATTTCGCTTCTGTCTGTCGGAGGAGATGAAGAGGCGATGTTGAAGG TTTACGAAGCTCTTCTAGCTCATGATGGCCGGATAACCAAATTTGAGCTTTCTATCCCCAGAATAGGTATCCGCCATCATCATATTGATCTCTTGATGCT CTACCTTACAAGGAGAGACGTCCAGGAGCTCATACTACTCTTAGCCTGGCCGGATTGCCGTTTGCATTCTTGTTTGTTCGCTGCATTTCACCTGAGAAGT CTGAAACTGAGGCTTTGTGAGTTTAGTCCACCATCTCCGTTTGTGGGGTTTAGTAAGCTTACCTTTCTTGAATTGGATGACATATCTCTGCCTGCTGGTT TCTATGATAATTTCCTTGTGGTTTGCCCGCTGCTTGAAGAGTTAAGGGTGTCAGATTGCAATGACCATGGTCAAATATGGCACTATGATTTTGATGATTT CTCCTACTACGAGGAGTATAAACTGGAGATGGTCGCTCTATTTGCTTCTCTTCCTTCGCTTGAGCAGCTGAATCTTGGCAGTGAATTGCTACTAGTTGAG CTAGACTTGGTGAGGTTTGCACTGGCCAACGCTCCACTTCTTCGTAGGATCTTTATCAAGTCTGTAAAGAAGTTGCCGTCTAGAGAGGCTCTGAACTTCC TGAAAGACGTGACGCAGTACAAACGTATTTCCAAAGAAGCCGAGGTCAGATATGTTTGGGGTGCTGATGCAGATGGAACTGTGTAG
AA sequence Show only first row Show all	>Lus10035151 pacid=23162363 polypeptide=Lus10035151 locus=Lus10035151.g ID=Lus10035151.BGIv1.0 annot-version=v1.0 MEALVASYGDDSSDSDSEVSPPPEPDSATASNTQSPLQLPLPPPPISLLTPPSSSIATLDYFQPCQPSRLRSFPHVEGNYSLHVYIPVHIPPASKKQVVP FLKKISQLVPHLHVVDADVPLSSLCKDDQKLEQVAVGREFHVSLGRTVPIRVHQIDSVVAMLRQKLQSQNRYWIDFNKWEVFVNDDQTRTFLSIEVVTGG LAEITKQINSVNEVYKLHNLPEFYKDPRPHISLAWALGDISDSFKRVVAEEEVKRSRIAGSVPNRSESTVERLRDCTDVLEKILTLLPIKDAARTSILSG KWRHRWRGISQLVFDHNFISLLSVGGDEEAMLKVYEALLAHDGRITKFELSIPRIGIRHHHIDLLMLYLTRRDVQELILLLAWPDCRLHSCLFAAFHLRS LKLRLCEFSPPSPFVGFSKLTFLELDDISLPAGFYDNFLVVCPLLEELRVSDCNDHGQIWHYDFDDFSYYEEYKLEMVALFASLPSLEQLNLGSELLLVE LDLVRFALANAPLLRRIFIKSVKKLPSREALNFLKDVTQYKRISKEAEVRYVWGADADGTV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51170			unknown protein		Lus10035151 [exp]	0	1
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10042459 [exp]	1.4	0.8885
AT5G12410			THUMP domain-containing protei...		Lus10005018 [exp]	3.0	0.8706
AT1G19980			cytomatrix protein-related (.1...		Lus10017215 [exp]	3.7	0.8412
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10036442 [exp]	4.9	0.8713
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10001923 [exp]	7.7	0.8560
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10013684 [exp]	7.7	0.8450
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Lus10026192 [exp]	10.0	0.8257
AT1G09010			glycoside hydrolase family 2 p...		Lus10000159 [exp]	10.2	0.8403
AT5G50340			ATP-dependent peptidases;nucle...		Lus10025843 [exp]	12.0	0.8264
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Lus10017135 [exp]	15.6	0.8485

Compare expression of checked genes

Lus10035151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.