Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68260 197 / 3e-64 Thioesterase superfamily protein (.1) AT1G68280 186 / 7e-60 Thioesterase superfamily protein (.1) AT1G35250 177 / 4e-56 Thioesterase superfamily protein (.1) AT1G35290 176 / 4e-56 Thioesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031948 [exp] 328 / 1e-115 AT1G68260 201 / 8e-66 Thioesterase superfamily protein (.1) Lus10035143 [exp] 241 / 5e-81 AT1G68260 239 / 8e-81 Thioesterase superfamily protein (.1) Lus10031959 [exp] 229 / 3e-77 AT1G68260 221 / 5e-75 Thioesterase superfamily protein (.1) Lus10031936 [exp] 55 / 6e-10 AT1G68260 50 / 2e-08 Thioesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G123102 [exp] 202 / 6e-66 AT1G68260 237 / 6e-80 Thioesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF03061 [flax] [poplar] 4HBT Thioesterase superfamily
Representative CDS sequence Show only first row Show all	>Lus10035152 pacid=23162413 polypeptide=Lus10035152 locus=Lus10035152.g ID=Lus10035152.BGIv1.0 annot-version=v1.0 ATGTTGCAGCAAGGAATAATAATTTCCAATTCTACCCCTAGAATAGCACAGCCGCCGCCGACGCTTTGCGCCTCTCATCATAACTGGCCTTCTGTCCGCC GTCTGCCTACCCTCACTCCGCCGTCACGATGGCGATCTTCCACAAGATGCAGCAGTACGACCAGAGCGACCCCGGCCCCCGCACCGGTTGGTATCAATGG TGGAACACACAGGATGACGGGGTTCCATGACATCGAAATGAAAGTACGAGACTACGAGCTTGATCAATACGGAGTCGTCAATAATGCTGTTTACGCCAGT TACTGTCATCATGCTCGTCATGACCTCCTAGAGAGAATTGGCCTCAGTGCGGACGCCATTGCTCGGACAGGCGACGAATTGGCACTCTCCGAGCTGTCTC TCAAATTCATTGCCCCTCTTAGAAAGAGTGGAGATAGGTTTATTATAAGAGCGAGAGTCTCCGACTATTCTGCTGCCCGATTTTACGTAGAACATTTCAT ATTCAAGTTGCCAAACAAGGAGGCCATATTGAAAGCAAAGGCCACGGCTGTTTGGCTGGATGGAAATTATAAGCCAGTTCGAATACCTGCAGAAGTTACA TCTAAACTTGTTCAGTTTCTCCCCCTTATTATTGACGACGGCTCTGGTCATTAA
AA sequence Show only first row Show all	>Lus10035152 pacid=23162413 polypeptide=Lus10035152 locus=Lus10035152.g ID=Lus10035152.BGIv1.0 annot-version=v1.0 MLQQGIIISNSTPRIAQPPPTLCASHHNWPSVRRLPTLTPPSRWRSSTRCSSTTRATPAPAPVGINGGTHRMTGFHDIEMKVRDYELDQYGVVNNAVYAS YCHHARHDLLERIGLSADAIARTGDELALSELSLKFIAPLRKSGDRFIIRARVSDYSAARFYVEHFIFKLPNKEAILKAKATAVWLDGNYKPVRIPAEVT SKLVQFLPLIIDDGSGH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68260			Thioesterase superfamily prote...		Lus10035152 [exp]	0	1
AT3G06880			Transducin/WD40 repeat-like su...		Lus10038340 [exp]	1.4	0.9549
AT3G15520			Cyclophilin-like peptidyl-prol...		Lus10037891 [exp]	1.7	0.9649
AT1G68260			Thioesterase superfamily prote...		Lus10031948 [exp]	1.7	0.9521
AT1G52670			Single hybrid motif superfamil...		Lus10011480 [exp]	3.7	0.9200
AT5G12920			Transducin/WD40 repeat-like su...		Lus10031253 [exp]	7.5	0.9303
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Lus10022110 [exp]	12.8	0.9445
AT2G30695			unknown protein		Lus10008364 [exp]	13.6	0.9387
AT2G31580			tRNAHis guanylyltransferase (....		Lus10006155 [exp]	15.6	0.9282
AT2G38140		PSRP4	plastid-specific ribosomal pro...		Lus10002497 [exp]	16.6	0.9310
AT3G15190			chloroplast 30S ribosomal prot...		Lus10005538 [exp]	17.7	0.9293

Compare expression of checked genes

Lus10035152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.