Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30530 224 / 7e-69 unknown protein AT5G01970 209 / 1e-63 unknown protein AT1G30050 171 / 1e-48 unknown protein AT4G02800 89 / 2e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031947 [exp] 424 / 3e-147 AT5G01970 263 / 1e-85 unknown protein Lus10019115 [exp] 337 / 5e-112 AT2G30530 267 / 5e-86 unknown protein Lus10034444 [exp] 333 / 2e-110 AT2G30530 268 / 3e-86 unknown protein Lus10035609 [exp] 113 / 1e-27 AT1G30050 187 / 5e-56 unknown protein Lus10003240 [exp] 110 / 1e-25 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1) Lus10022037 [exp] 88 / 5e-19 AT4G02800 276 / 1e-91 unknown protein Lus10014668 [exp] 87 / 1e-18 AT4G02800 262 / 1e-85 unknown protein Lus10000658 [exp] 85 / 6e-18 AT4G02800 266 / 1e-87 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G132300 [exp] 310 / 7e-101 AT2G30530 253 / 9e-80 unknown protein Potri.013G160100 [exp] 304 / 9e-99 AT2G30530 266 / 8e-85 unknown protein Potri.006G111900 [exp] 228 / 7e-69 AT5G01970 352 / 2e-118 unknown protein Potri.016G141300 [exp] 224 / 6e-68 AT5G01970 353 / 2e-119 unknown protein Potri.002G053100 [exp] 87 / 2e-18 AT4G02800 276 / 3e-91 unknown protein Potri.005G209400 [exp] 84 / 2e-17 AT4G02800 291 / 3e-97 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035153 pacid=23162383 polypeptide=Lus10035153 locus=Lus10035153.g ID=Lus10035153.BGIv1.0 annot-version=v1.0 ATGCCGTCGCCGTGGACGGCTTCCACGCCGGCCTTTAACTCCTACGATAATCAGAGGGACGAAGATAGGAAGGGCAGGCAAATCGATCAGGGAGCCCGAG ATTCAAATTCAGCAGCCACCACTGGTCTCGCCGCCAAAGCCATCGGTGCTTCCTCCGCCGCCCAAACCTTCCGAGACTCCTCCCTCTCCTCCGCTTATGC CACCTTTCCTTCCTCTCCTTCCTTCTCCTCCTCTATTCATTCTTCGTCCAATGCTTCCAAGGTATTCTCTTCGCTTAGGTTTTACGGAATCTCCGTTACC AATTTCCTTTTTACCATTTACTTGTCGGTTTTCCTCAAGGTACATGATCTCGCCGGCAGTCCTCGAGGTTATACCTCCATGAGTAGCTTCAACAAACCAA ATCCGGATCACGATCGCAAACCAGGTAAATTTTGGGGTACTCTCGCGCGAAAAGCTAAATCAATTATCGACGAGGTTGCTGAAAATGGAGACCAGCGGCA ACAGCAACACCACTCTCACTCTCCTGCGGATCCTAAGCCACGTTCTGATCCCCTGATCTATTCACCCAAGAATGGAACTCCAACTAATGAAAGCCGCAGA AAGAAAGAAGGTCCTGTCTTGCGCAAAGGGCTCAATGCGTTATCTTCGTCCCTCAATTATATTGGCAATGCAGTAGAGGAGGGCCTCACGAAGGTGGAGA ACCGTACAGCTGACATAATCCAAGAAACACGAAAGCATATAAGGGAAAGGCCTGGTGGTAGTACCGCACAGAACCAGACGGCAAGCCAAAGTACTGCAGG ACTACAACCTCAAGTACAGGGAAAGGTGCAGCAGCCACAAACACAAACTGAACTGGAGCTTCAGCTAAAGGCATCTCGCGACGTTGCAATGGCAATGGCT GCTAAAGCAAAACTATTGCTTCGGGAGCTGAAAGCTGTTAAAGCCGATTTGGCTTTTGCGAACGAGAGGGGTACTCAGCTTGAGGAGGAAAACAAGGTCC TCAGGGAGAGTCGCGAAAGTGGTGGTAATCTGGAAGATGATGACCTGATTCGTCTTCAACTGGAGTCACTACTAGCAGAGAAGGCACGGTTGGCCCACGA GAATTCAGTTTTCGCTCGCGAAAATCGATTCCTAAGCGAAGTAGTGGAATATCACCAGCTGACAATGCAGGATGTTGTGTACTTGGACGAAGGCACGGAA GAAGTCACAGAAGTATACCCCGTCAAGGTAGTTTCGCAAACCCTGACCAGTGCAGGAGCAGCCACGTCAGCTGAAATGTCCGTCGGGACAAACCTGGTCG GAAATAGAGAGACGTTGGTGCGCCCTGTGCCACCACCCGGGCTCGGGATGGGCACAGAGCAGGCTTCTCGCTAA
AA sequence Show only first row Show all	>Lus10035153 pacid=23162383 polypeptide=Lus10035153 locus=Lus10035153.g ID=Lus10035153.BGIv1.0 annot-version=v1.0 MPSPWTASTPAFNSYDNQRDEDRKGRQIDQGARDSNSAATTGLAAKAIGASSAAQTFRDSSLSSAYATFPSSPSFSSSIHSSSNASKVFSSLRFYGISVT NFLFTIYLSVFLKVHDLAGSPRGYTSMSSFNKPNPDHDRKPGKFWGTLARKAKSIIDEVAENGDQRQQQHHSHSPADPKPRSDPLIYSPKNGTPTNESRR KKEGPVLRKGLNALSSSLNYIGNAVEEGLTKVENRTADIIQETRKHIRERPGGSTAQNQTASQSTAGLQPQVQGKVQQPQTQTELELQLKASRDVAMAMA AKAKLLLRELKAVKADLAFANERGTQLEEENKVLRESRESGGNLEDDDLIRLQLESLLAEKARLAHENSVFARENRFLSEVVEYHQLTMQDVVYLDEGTE EVTEVYPVKVVSQTLTSAGAATSAEMSVGTNLVGNRETLVRPVPPPGLGMGTEQASR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01970			unknown protein		Lus10035153 [exp]	0	1
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10021176 [exp]	3.9	0.7876
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10040270 [exp]	12.2	0.7085
AT5G56610			Phosphotyrosine protein phosph...		Lus10012928 [exp]	14.4	0.7289
AT2G23970			Class I glutamine amidotransfe...		Lus10033793 [exp]	16.1	0.6964
AT5G64500			Major facilitator superfamily ...		Lus10011580 [exp]	20.0	0.7078
AT2G43430		GLY1, GLX2-1	GLYOXALASE II, glyoxalase 2-1 ...		Lus10033662 [exp]	20.9	0.6587
AT1G59650		CW14	Protein of unknown function (D...		Lus10039463 [exp]	25.3	0.7277
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10026626 [exp]	28.0	0.6933
AT5G06140		ATSNX1	ARABIDOPSIS THALIANA SORTING N...		Lus10016994 [exp]	28.3	0.6918
AT2G17550			unknown protein		Lus10016693 [exp]	29.1	0.6885

Compare expression of checked genes

Lus10035153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.